PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026589
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 308aa    MW: 33418.9 Da    PI: 6.955
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026589genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.30.000151912291255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R +++ +++++L++l+ +      +K + a++L +A+ YI+ Lq
  Lus10026589 191 RKEKLGERIATLQQLVSPF-----GKTDTASVLHEAMGYIRFLQ 229
                  66788899********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.11E-5177233No hitNo description
SuperFamilySSF474595.23E-12177243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.735179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-7188235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MADDDHHHHH HQPTAVTAGA AAFFLHHQEQ ELHGDEQEDD NNGGGEEDLL LTDGPNHHHP  60
TTFSQLLFSS SHHQPHNASA ATTSSFGLND INSIYHLHNN TSSSYPPQML CFGSTDPQGV  120
ICVLPSPKIN TITPSSNRKR EGLTQEQSLN SVAVNSSNAT DSTNCGPPPE ARQRASKRSR  180
TDKSTPSPRP RKEKLGERIA TLQQLVSPFG KTDTASVLHE AMGYIRFLQD QIQVLCSPYL  240
QPPPPSTSAA SPGFTNYQCK SHFGFGSFLG GISLSLPLKC ARYLASPSPG HGTPNWLSYS  300
WICVVTR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026589
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100265890.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103212129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-29bHLH family protein