PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026510
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 685aa    MW: 76138.8 Da    PI: 8.0435
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026510genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.4e-23127228199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +++ 
  Lus10026510 127 FAKTLTQSDANNGGGFSVPRYCAETIfpkldytADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSAFVNHKKLVAGDSIVFL--RAENGD 220
                  89****************************997555555..89***********************************************..448899 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Lus10026510 221 LCVGIRRA 228
                  9****997 PP
2Auxin_resp113.22.5e-37290373183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa++a+++++FevvY+Pras++eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp++Wp+S+Wr+L+
  Lus10026510 290 AATRAENGQPFEVVYYPRASAPEFCVKASLVKSALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVHFADPLHWPDSPWRLLQ 373
                  78999*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-37119231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-29120233IPR015300DNA-binding pseudobarrel domain
CDDcd100175.36E-22126227No hitNo description
SMARTSM010195.1E-22127229IPR003340B3 DNA binding domain
PfamPF023621.7E-21127228IPR003340B3 DNA binding domain
PROSITE profilePS5086313.07127229IPR003340B3 DNA binding domain
PfamPF065077.4E-32290373IPR010525Auxin response factor
PROSITE profilePS5174517.361593673IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MITFMEAKDK LKEVDKCLDS QLWHACAGGM VQMPQVNSRV FYFPQGHAEH STGPVNFRTT  60
LPNLRPYILS RISAIKFMAD PETDEVYAKM KLAPVTSSGD GSDFDDDQGL MNGEGPENNN  120
KQAPTSFAKT LTQSDANNGG GFSVPRYCAE TIFPKLDYTA DPPVQTILAK DVHGETWKFR  180
HIYRGTPRRH LLTTGWSAFV NHKKLVAGDS IVFLRAENGD LCVGIRRAKR GIGGGPESSW  240
NPAGGNNYGG FSSFLREEEN KLSRNGNNGN SGNGNLMGRG KVRPDSVIEA ATRAENGQPF  300
EVVYYPRASA PEFCVKASLV KSALQIRWCS GMRFKMAFET EDSSRISWFM GTISSVHFAD  360
PLHWPDSPWR LLQVAWDEPD LLQNVKRVSP WLVELVSNMP AIHLSPFSPP RKKLRLPHHP  420
DFPLDGQFPM PMFTGNLIGH HHSSPFGCLP DHNTTTPAGM QGARHAHYGL PLSDLQHFNN  480
KIQTTGHLFP PLVQRQQHMI VPKPSMSSES ISCLLTMGNS TNQSTTPKFK PNEAKAVHQF  540
VLFGKPILTE QQISLSGSGD TASPNYKRNN SSDGPEPSPA REGSNHLETE PASHQCRVFF  600
ESDEVGRPID LSSMRSYDEL HRKIAEMFQV ENPETLSNIL YRDLVGIVRH IGDEPYSEFA  660
RNARRLTILT DSSSDNVGRT RQKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-81839441388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519531.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLB9S0L20.0B9S0L2_RICCO; Auxin response factor
STRINGLus100265100.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]