PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026278
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 538aa    MW: 60621.9 Da    PI: 5.3465
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026278genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.83.8e-08270312754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+r+N ++  Lr l+P  +       l Ka+i   A+e++k+L
  Lus10026278 270 QAERRRRKRLNGRLYDLRALVPIiS------DLKKASIIGDAIEFVKEL 312
                  68*********************66......799*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.2E-92114IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088812.963263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-13267325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-9269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-11270325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-6270312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00121277315No hitNo description
CDDcd048730.00168402465No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MERLRPLVGL KGWDFCLLWK LSDDQRFLEW MDCCCGGTDQ SNGGEEEHVH QFSGASSAIF  60
PCRDGIFQHP TTKSCELLSH LPTTLSLDES GNIHAEALIS NFPRWLNFSS SSSGSTLLEE  120
TVGTRVLTPG PAGLQSYDFS VDRLHGMCSS PMNLLQQFSY SNEENNLTTK SNNNNNSSLF  180
FEGGEEQNGG NNNNEMHQHH HHEEVEFGES TVGKEQRQGN DHDKEGIKQE MNGRSDSISD  240
CSDQNADDDQ QQYSNKYRRK NGKPEAKNLQ AERRRRKRLN GRLYDLRALV PIISDLKKAS  300
IIGDAIEFVK ELKRQAKELE EELEANSDDE EISRNSIFNN NNNNSMATTH VVLGQNVGMN  360
EPDSVSGLAK VLNQESEINH EKGQQMEVQV EVAQIDGNGF FVKVFCEHRA GGFVRLLEAL  420
DSLGLEVTNA NVTSCKSLVS NVFRVQKKDS EMVQAEYVRD SLLELTREPL PRTWTEIQVK  480
ASENRNGMMD HHHHQHHLHP SNYNHHQVMQ QNGHLMNSDQ LYPATAPQLN MSFSNLI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257277RRKNGKPEAKNLQAERRRRKR
2271278ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026278
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576045.11e-158transcription factor ABORTED MICROSPORES isoform X2
TrEMBLA0A2N9FLJ01e-149A0A2N9FLJ0_FAGSY; Uncharacterized protein
STRINGLus100262780.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-51bHLH family protein