PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026234
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 446aa    MW: 50117 Da    PI: 7.1358
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026234genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3452e-14681431698
                  EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
           B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                   ++p +f  ++ +g + +  + +++++ g+ ++vk+  ++++    +++GWkeFv +++L +gDf+vF+l++  + f   v+vf+
  Lus10026234  68 QSIPVEFS-KYlEGREVGCEDAVMRSPGGKLYRVKM--NGRK----FEAGWKEFVGEHDLHVGDFLVFRLVDAgKVF--DVMVFD 143
                  48*****9.55599999999****************..8888....9**********************99865666..888887 PP
2B354.81.8e-17210301496
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  v +++d l++grl +p kfa+ hg++  ++++ ++++e+g  W v++ +y+ +s+ ++l++GW +F ++ngLk gD++ ++l +  ++++v++v
  Lus10026234 210 VSVTPDKLERGRLKVPGKFAKIHGLE-VKNTEAVVYNEEGIPWPVRInCYSYSSRFTYLERGWMDFQRENGLKLGDTFNLELLH-GGEKPVLRV 301
                  6789****************888776.6889****************556888888*************************987.555566665 PP
3B346.94.9e-15344430794
                  .-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
           B3   7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                  +  +l+ + l++pk+ a ++ g++ e++ t++l + +g  W v++ +++k g++++++GW e vk+n+L +gD +  +l++r  +   ++
  Lus10026234 344 TIPHLQGATLSIPKELA-QYsGLSGECP-TMILSNGNGGHWPVRI-HKRKTGHVYIGRGWTELVKDNNLSAGDLLRMELVERgLSPMIMF 430
                  556777889********.6647776676.****************.6788888*************************997544444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.0E-556145IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.7E-1467147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1468152IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-1068142IPR003340B3 DNA binding domain
CDDcd100172.08E-1569143No hitNo description
PROSITE profilePS5086310.51870145IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-15205299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-17205299IPR015300DNA-binding pseudobarrel domain
CDDcd100175.12E-17206301No hitNo description
PROSITE profilePS5086312.266207307IPR003340B3 DNA binding domain
SMARTSM010197.2E-16208305IPR003340B3 DNA binding domain
PfamPF023621.1E-15209300IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-14336431IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.632338433IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-14338431IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-11340434IPR003340B3 DNA binding domain
PfamPF023621.4E-13344429IPR003340B3 DNA binding domain
CDDcd100171.75E-12353430No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MNSTFKEEAG FVHTGKPFLC GNYTEKVAFK SRGNRTGKGE EKEDGNGDYE GAKFPYQDNK  60
PLSRITEQSI PVEFSKYLEG REVGCEDAVM RSPGGKLYRV KMNGRKFEAG WKEFVGEHDL  120
HVGDFLVFRL VDAGKVFDVM VFDPSACERQ YPSSKVDLKE EELNEELPSP CPDFADSETR  180
HDPTDSETPM KRMEIGEDGA SGPVYPSFVV SVTPDKLERG RLKVPGKFAK IHGLEVKNTE  240
AVVYNEEGIP WPVRINCYSY SSRFTYLERG WMDFQRENGL KLGDTFNLEL LHGGEKPVLR  300
VSGLHSNPTL EKQYREKVKM KVMKKSLASG FPNSVSYHFF VGVTIPHLQG ATLSIPKELA  360
QYSGLSGECP TMILSNGNGG HWPVRIHKRK TGHVYIGRGW TELVKDNNLS AGDLLRMELV  420
ERGLSPMIMF KVVSRIKIVP KQEED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026234
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100262340.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16161410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.17e-41B3 family protein