PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026033
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 375aa    MW: 40128.5 Da    PI: 7.265
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026033genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.82e-22245307163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  e+e+kr++rkq+NRe+ArrsR+RK+ae+eeL+ kv++L + N+ Lk+el +l++e++klk+e+
  Lus10026033 245 EREVKRQKRKQSNRESARRSRLRKQAECEELQHKVENLNSDNHNLKNELLRLSEECEKLKAEN 307
                  799*********************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077778.4E-20190IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.6E-6117215No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-18242305No hitNo description
PfamPF001701.3E-19245307IPR004827Basic-leucine zipper domain
SMARTSM003383.9E-20245309IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.852247306IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.5E-10248304No hitNo description
CDDcd147021.79E-22250300No hitNo description
PROSITE patternPS000360252267IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGTGEENTPA KPSSKPAASS TQEAPTTPAY PEWPGSMQVY YGAGATPPFF PSSVASPHPY  60
VYQHPMMPHY GTPVPYPAMY PGGVYAHPNM AMTPNSMAPG VEMEGKAANG KDQPSGKKSK  120
GTSASKAGES RKVASGSGND AVSQSGESGS DGSSDGSDEQ QEYTGRKKGS FNQMLADANA  180
QNNTAAPNAQ GAFPVVSVPG TNLNIGMDLW NASPAAAAAL GTAKMRSGGT SGIVPTPEQW  240
GQQDEREVKR QKRKQSNRES ARRSRLRKQA ECEELQHKVE NLNSDNHNLK NELLRLSEEC  300
EKLKAENDCI KVHIHASLVA SCRIMILVCE LNIISINHTY RKLVFQKKLK ESYGQEATDQ  360
LEQNDSGRGD EGNS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261267RRSRLRK
2261268RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026033
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021661117.11e-142G-box-binding factor 1-like isoform X1
RefseqXP_021661187.11e-142G-box-binding factor 1-like isoform X1
SwissprotP427747e-89GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A2C9UTL41e-134A0A2C9UTL4_MANES; Uncharacterized protein
STRINGLus100260330.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59333450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.25e-71G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]