PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10026008
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 305aa    MW: 34247.5 Da    PI: 7.6157
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10026008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278.1e-09135182455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i  ++  L++l+P +    +k    a +L + ++Y++sLq
  Lus10026008 135 SHSLAERARREKISRKMKYLQDLVPGC----NKITGRAGMLDEIINYVQSLQ 182
                  8**************************....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-15129199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.32E-8129186No hitNo description
PROSITE profilePS5088814.532131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-16131195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6135182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-7137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MPSSQEHTSC MEDMSVLERQ SARFKWLLQQ QQQFKDTSFI MPPQFHHLLL PSGFDFLSPD  60
QIASHPDQYC LSTSSNKRKT EVGRGMKKRV KGEREMVECS SGTRSTETEK NCKDSGAKKS  120
EYIHVRARRG QATDSHSLAE RARREKISRK MKYLQDLVPG CNKITGRAGM LDEIINYVQS  180
LQRQVEFLSM KLAAVSPGME FSSDKHPGKE LQAYGSFPTA ISSVFPGAAA GSLAQLHHLE  240
ASRELEILNK NHSQLSSSPE ETPTSSTFIP ELCVESSCYP QIQAQHFWEA DSQNFQDMGF  300
HHQG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10026008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022752141.14e-68transcription factor HBI1-like
TrEMBLA0A2C9WCG32e-66A0A2C9WCG3_MANES; Uncharacterized protein
STRINGLus100260080.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-50bHLH family protein