PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025940
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 721aa    MW: 79692.3 Da    PI: 6.8984
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025940genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.5e-2065120156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +rk  ++t+eq++eLe++Fe + yp++++   L++klgL+ +qVk+WFqN+R++ k
  Lus10025940  65 KRKYYRHTEEQIKELESFFEGCAYPDEKQLNALSRKLGLEMKQVKFWFQNHRIQIK 120
                  688999**********************************************9877 PP
2START111.81e-3528245544206
                  CEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEE CS
        START  44 sgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSv 130
                    ea ++s+ v m +  lve l+d++  W+e ++    + +tl+ is g      g+lq m+ae++ lsp+vp R   f+R++++l +g+w+++d S+
  Lus10025940 282 WNEANKVSRTVLMRSLPLVELLMDVN-LWSEAFTglvsQGTTLDIISFGvdgtrnGTLQMMSAEFYTLSPMVPaRHTKFLRSCKKLADGVWAVMDLSL 378
                  56788999999999999*********.*********************************************************************** PP

                  E-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 131 dseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                  +  q+ ++  s  +  + lpSg++i+++ ng ++vtwv++  +++++  + ++++v+sg+ +ga +w atlqr+ce+
  Lus10025940 379 STSQEASSsRSAPIAMRSLPSGCIIHDLFNGCCEVTWVDNSLYNENSFNQFMQPMVSSGMGFGATRWIATLQRYCES 455
                  99999998855556668**********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.42E-1851123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-1953116IPR009057Homeodomain-like
PROSITE profilePS5007116.29362122IPR001356Homeobox domain
SMARTSM003893.6E-1864126IPR001356Homeobox domain
PfamPF000469.2E-1865120IPR001356Homeobox domain
CDDcd000862.74E-1765123No hitNo description
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
SMARTSM002342.4E-25242455IPR002913START domain
SuperFamilySSF559611.65E-17275455No hitNo description
PfamPF018521.5E-30284455IPR002913START domain
PROSITE profilePS5084826.539299458IPR002913START domain
SuperFamilySSF559614.81E-9514713No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MEKTSGVHHE LNIPTGAGKQ KDVAQQVDVV ADNLVDRLDV KPELGSNLSQ LVGSSHGEMQ  60
QRTRKRKYYR HTEEQIKELE SFFEGCAYPD EKQLNALSRK LGLEMKQVKF WFQNHRIQIK  120
AQHKRHGIIM LHAENNKLRT ENQFLRTNLI NEICNGCGGP VIPAPLSFKE QQLRWENSIL  180
EEMIIRVRSV CNNFLGIPLI SSTLASSSSG AATTRLDGTI EGLNLGTLPS STPIYEKLMY  240
VLFSQLAMNE FTTMVNIDGF GNLSDVLNLE EYDRMVVPNG LWNEANKVSR TVLMRSLPLV  300
ELLMDVNLWS EAFTGLVSQG TTLDIISFGV DGTRNGTLQM MSAEFYTLSP MVPARHTKFL  360
RSCKKLADGV WAVMDLSLST SQEASSSRSA PIAMRSLPSG CIIHDLFNGC CEVTWVDNSL  420
YNENSFNQFM QPMVSSGMGF GATRWIATLQ RYCESIAILM SCTHYLPQNH SMAGKKSLFE  480
LSRRMVNLYC SGVSVGSSSS MWAKLLPVLA NMSHNVSIMV RKNSSELGET IGVTLSASTS  540
VWLPISRRTL FQYLVNHATR KDWDVLANGE KLTELFCLPK TNVRGNSISV FHTPQYGGSP  600
GPLLILQEIW NDESSSLMVY APVDMRSMQV VMNGGDTTSV SLLPSGFAIF PDSNSGVGSG  660
DANTSIAIGS TGGCIMTVGF QIFVSSNPTV EVTRTSVEFM DQAVSCTIKR IKDIFQISEI  720
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100259400.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.11e-159homeodomain GLABROUS 1