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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10025834 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 225aa MW: 24352 Da PI: 4.2767 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.2 | 1.3e-15 | 49 | 98 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +g++v+eIr p++ + r++lg+f tae+Aa+a++ a ++++g Lus10025834 49 IFRGVRKRS-WGKFVSEIRQPRK---KSRIWLGTFPTAEMAARAHDVASLSIKG 98 59****888.**********843...6*******************99888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.78E-30 | 48 | 108 | No hit | No description |
Pfam | PF00847 | 1.6E-10 | 48 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 49 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-33 | 49 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.102 | 49 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-19 | 49 | 107 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.6E-10 | 50 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-10 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MPEKYTTSTT TTTTTTSPSS SSSSSSGDNR KRPRNDGDDA AQQQNVQPIF RGVRKRSWGK 60 FVSEIRQPRK KSRIWLGTFP TAEMAARAHD VASLSIKGDS AILNFPHLAA FLPRPASLSP 120 PDIQEAAAKA AAMVDLDSNS SSAALIAEEE EEELGEIVEL PNIEGSLFFE PEFGVNELVE 180 FESSAECQQQ LGWVYYCYPP PPAGLDLDTT VISGELDGPL LWAD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 50 | 107 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10025834 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012470173.1 | 2e-53 | PREDICTED: ethylene-responsive transcription factor TINY | ||||
Refseq | XP_016741318.1 | 2e-53 | PREDICTED: dehydration-responsive element-binding protein 3-like | ||||
TrEMBL | A0A0D2QNZ7 | 5e-52 | A0A0D2QNZ7_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8NTC9 | 5e-52 | A0A1U8NTC9_GOSHI; dehydration-responsive element-binding protein 3-like | ||||
STRING | Lus10025834 | 1e-164 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 8e-43 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10025834 |