PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10025772

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Trihelix

Protein Properties

Length: 374aa MW: 42442.1 Da PI: 4.2117

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10025772	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.5	1.3e-16	135	219	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+qe+ aL++a ++ + +r++l+ W ev++k++e ++er+ +qCk++++ ++k+ykk+k ++ ++++ss +++yf++++ Lus10025772 135 WTEQETFALLDAWGDKFLQRGRKSLRSDEWLEVADKVSEvSKIERTDTQCKNRLDTVKKKYKKEKGRMVAGSCTSS-SWVYFKKMD 219 ***********************************762678************************98887.9*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-20	134	221	No hit	No description
PROSITE profile	PS50090	6.028	135	192	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MDKNSYEAPQ QGYNPPNQYG SEDDDEEDEE DEELSMDDEH LGEEDAGDDN QNISNIQGAS 60 KDVDNDEDED EDDGFYDEAD DNEDAGVDNA DVGRHPKKRK LMSLSSSYEF APRVPPLVPS 120 AKPLLVGGRN PLTDWTEQET FALLDAWGDK FLQRGRKSLR SDEWLEVADK VSEVSKIERT 180 DTQCKNRLDT VKKKYKKEKG RMVAGSCTSS SWVYFKKMDM LMSQQGGGRG LSCGLDSGEY 240 VFMNPKVYLN RANGFDEMRD SPGNTESGDD DDISDGLPPK KRWCRSRGQN EEEGSSSFHL 300 LADSIERFSE IYEKIETSKR QQMVELEKMR MDFHRDLEMQ RREIMERAQF EMAKIRGSGH 360 DEEQDTSGED ASA*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MDKNSYEAPQ QGYNPPNQYG SEDDDEEDEE DEELSMDDEH LGEEDAGDDN QNISNIQGAS  60
KDVDNDEDED EDDGFYDEAD DNEDAGVDNA DVGRHPKKRK LMSLSSSYEF APRVPPLVPS  120
AKPLLVGGRN PLTDWTEQET FALLDAWGDK FLQRGRKSLR SDEWLEVADK VSEVSKIERT  180
DTQCKNRLDT VKKKYKKEKG RMVAGSCTSS SWVYFKKMDM LMSQQGGGRG LSCGLDSGEY  240
VFMNPKVYLN RANGFDEMRD SPGNTESGDD DDISDGLPPK KRWCRSRGQN EEEGSSSFHL  300
LADSIERFSE IYEKIETSKR QQMVELEKMR MDFHRDLEMQ RREIMERAQF EMAKIRGSGH  360
DEEQDTSGED ASA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10025772

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012073331.1	1e-132	trihelix transcription factor ASIL1
TrEMBL	A0A067KQH9	1e-131	A0A067KQH9_JATCU; Uncharacterized protein
STRING	Lus10025772	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	5e-72	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Lus10025772