PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025406
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 289aa    MW: 32489.5 Da    PI: 9.5637
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025406genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.71.7e-1429119186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W+++ + +L+ea  ++  +l+rg+l++++W++v++ +       ++  r+ +qCk++ + ++k+yk++k++    +  ++s+++++d+l+
  Lus10025406  29 CWSEEATATLVEAWGNRYLELNRGNLRQKDWKDVADTVnsihgLTKKTYRTDVQCKNRVDTIKKKYKAEKTRVAASNGAVTSSWRFYDRLD 119
                  7*************************************99999899999***********************99999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-2427121No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGDLTDSGTT PNPNANSSTS RPMPIREDCW SEEATATLVE AWGNRYLELN RGNLRQKDWK  60
DVADTVNSIH GLTKKTYRTD VQCKNRVDTI KKKYKAEKTR VAASNGAVTS SWRFYDRLDS  120
LVGANFSGAA VSKKQQRRES LSPSPPVALP LNNYRRTTAN PSMTMATLPQ KRPSAAGEGY  180
IRRNYSAAAA AAAAAESESE EEEEEMEEDE EGEGVKRLGK AIEKFGEVYE RVESEKLRKM  240
VELEKQRMKF AKDLEMERMR MFTETQIQLE KIKRGKKKQR TSGGNVDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273279RGKKKQR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025406
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303549.11e-120trihelix transcription factor ASIL2
RefseqXP_011033845.11e-120PREDICTED: trihelix transcription factor ASIL1 isoform X1
TrEMBLA0A2P2KXN41e-121A0A2P2KXN4_RHIMU; Uncharacterized protein MANES_17G056000
STRINGLus100254060.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.12e-51sequence-specific DNA binding transcription factors