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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10025388 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 259aa MW: 28899 Da PI: 9.0776 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49 | 1.1e-15 | 161 | 252 | 5 | 96 |
-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 5 ltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 ps+ ++ + l lp +f+ e+ ++k s ++ l+ + g++W+vk+++ +k+ +++ +k W F+++ngLk D++ F++ ++ +++e+++ v Lus10025388 161 VQPSYFTAGsKSLFLPSSFFLENFKDK--SGDIFLRVLGGNTWKVKYSVYGKKAAVFTAKTWGAFARDNGLKLDDVCAFEVPKKcETKEPTLNV 252 4444444434779**********8775..558***************99999999*************************87777777776655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.318 | 1 | 51 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.34E-6 | 9 | 48 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-6 | 9 | 49 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.1E-20 | 149 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-18 | 150 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.03E-15 | 155 | 238 | No hit | No description |
SMART | SM01019 | 1.4E-11 | 157 | 258 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.632 | 158 | 258 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-12 | 160 | 251 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MPSESGDKGG KMWFDEGWRE FAAFYSIAPD HLLAFQYHGH GNFHVFIFTE IVYRTQLPEP 60 DVHVKLECGA DSYGEIFPSP KTRDKRPLES LPPPPSKLRR TTLNSDRRLG EYLGHEGLNH 120 DLGGASWKRK LITFAGGETT SCLARATAAF KSENPFIMKV VQPSYFTAGS KSLFLPSSFF 180 LENFKDKSGD IFLRVLGGNT WKVKYSVYGK KAAVFTAKTW GAFARDNGLK LDDVCAFEVP 240 KKCETKEPTL NVVIFHAA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10025388 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10025388 | 0.0 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10025388 |