PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10025203
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 270aa    MW: 29881.4 Da    PI: 9.3648
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10025203genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.1e-09556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     ++rWT+eE+  l+ ++ ++G+g W++I            R+  ++k++w++ 
      Lus10025203  5 KQRWTAEEEAALKGGILKHGTGKWRAILMDPDfgpvlRIRSNVDLKDKWRNI 56
                     79***************************99999**999***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.672161IPR017930Myb domain
SuperFamilySSF466891.17E-13259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-11456IPR009057Homeodomain-like
SMARTSM007179.2E-4459IPR001005SANT/Myb domain
PfamPF002491.6E-5556IPR001005SANT/Myb domain
CDDcd116601.27E-17657No hitNo description
SMARTSM005261.3E-1186153IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150420.40788158IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.99E-1289166IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.1E-1290161IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.3E-690151IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MRGPKQRWTA EEEAALKGGI LKHGTGKWRA ILMDPDFGPV LRIRSNVDLK DKWRNIKVMA  60
IWGSRHKAKL ALNTTPHNPE LEQSLKDLLP KLDSLIVEAI STLKEPEGSD EASIATYIEL  120
LCHDRGVPNL RKLLARKLKL LIATGKLIKV KQQYRIAPSS TVSKGTNESP LLVVDGKQKN  180
TSNVDKNSSK IQSMSHVEQE LHRIQGMTAE EAAAVAVKAI AEAEFAIAEA EEAARKAERA  240
EAEAEACHVF AEAAVQAFRY QTCHYWSFL*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10025203
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633738.16e-83telomere repeat-binding factor 2
RefseqXP_021633739.16e-83telomere repeat-binding factor 2
SwissprotQ8VWK41e-51TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A251JI531e-81A0A251JI53_MANES; Uncharacterized protein
STRINGLus100252030.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-43telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]