PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024848
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 678aa    MW: 73312.8 Da    PI: 6.7446
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024848genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.55.2e-12241299361
                  XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                  +++r + + +NRe+ArrsR+RK+ ++ eLe  + +L  e+++L ++l   + ++++   
  Lus10024848 241 RSRRCKTMLSNRESARRSRRRKQDQLNELESQAGQLRDERTTLLSRLTDVNHKCDEASV 299
                  67888999*****************************************9999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-10236303IPR004827Basic-leucine zipper domain
PfamPF001703.5E-9240295IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415241293IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.6E-7243294No hitNo description
SuperFamilySSF579597.88E-9243292No hitNo description
PROSITE patternPS000360246261IPR004827Basic-leucine zipper domain
PfamPF124982.2E-14310358IPR020983Basic leucine-zipper, C-terminal
Gene3DG3DSA:3.20.20.701.5E-100426676IPR013785Aldolase-type TIM barrel
HamapMF_0013137.336426675IPR002028Tryptophan synthase, alpha chain
SuperFamilySSF513661.22E-85426656IPR011060Ribulose-phosphate binding barrel
PfamPF002903.8E-94427675IPR002028Tryptophan synthase, alpha chain
TIGRFAMsTIGR002622.7E-93428673IPR002028Tryptophan synthase, alpha chain
CDDcd047242.60E-109430673No hitNo description
PROSITE patternPS001670460473IPR018204Tryptophan synthase, alpha chain, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006568Biological Processtryptophan metabolic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004834Molecular Functiontryptophan synthase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MHNVFSADDF TDPFWQAAAP SDAAINRNAS EWDLERFLRE FPSSGSNSAS DSTVTVPSQS  60
PPSTKPEICD GDVIEIRQPQ LRSHYAQNHA PSMPHSQPHH VPQQLDRAPM GATIDTEEYR  120
AFLKSQLDLA CAAVARNQTA VVKPPDFSPL LENQSPAPAA NSFHLGSQQP CAGASAGIGL  180
GNTIAQRQDH GSPTIQPLPV PQKKQEVQTR QTTGGSSGED SDDDDLEGDT GTNGAPADVK  240
RSRRCKTMLS NRESARRSRR RKQDQLNELE SQAGQLRDER TTLLSRLTDV NHKCDEASVD  300
NRVLKANIET LRAKVKMAEE QVKRVTGLNP LLLARSNVPS MGMHHQYTGG TPNHQSFHHP  360
PPNMAPSVPP PHMQQPMHYP RNNVTPVTAN SHGVSGMNHN MGGMNSMPFR ANEHNRVADV  420
VAPPMQKPVA FIPYITAGDP DLSTTAEALK VLDSCGSDII ELGVPYSDPL ADGPVIQAAA  480
TRSLAKGTNF DSIISMLKKV VPEISAPIAL FTYYNPILKR GIGKFMSTVK ETGIHGLVVP  540
DVPLEETELL RTEAVKHGIE LVLLTTPTTP TERMKSIVEA SEGFIYLVSS IGVTGARASV  600
SKKVQTLLQE IKEATTKPVA VGFGISKPEH VKQVMEWGAD GVIVGSAMVR LLGEAKSPEE  660
GLQELEKFTK SLKAALL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rd5_A1e-1064176765261Tryptophan synthase alpha chain, chloroplast
1rd5_B1e-1064176765261Tryptophan synthase alpha chain, chloroplast
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255262RRSRRRKQ
2257262SRRRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024848
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8307831e-53EU830783.1 Linum usitatissimum clone LU0030G06 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100248480.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF340923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.19e-44basic leucine zipper 25