PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024847
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 456aa    MW: 49520.1 Da    PI: 7.7889
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024847genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.32.8e-12241300362
                  XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                  +++r + + +NRe+ArrsR+RK+ ++ eLe  + +L  e+++L ++l   + ++++   +
  Lus10024847 241 RSRRCKTMLSNRESARRSRRRKQDQLNELESQAGQLRDERTTLLSRLTDVNHKCDEASVD 300
                  6788899******************************************99999876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-10236303IPR004827Basic-leucine zipper domain
PfamPF001702.2E-9240295IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415241293IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-7243294No hitNo description
SuperFamilySSF579594.34E-9243292No hitNo description
PROSITE patternPS000360246261IPR004827Basic-leucine zipper domain
PfamPF124981.5E-14310358IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MHNVFSADDF TDPFWQAAAP SDAAINRNAS EWDLERFLRE FPSSGSNSAS DSTVTVPSQS  60
PPSTKPEICD GDVIEIRQPQ LRSHYAQNHA PSMPHSQPHH VPQQLDRAPM GATIDTEEYR  120
AFLKSQLDLA CAAVARNQTA VVKPPDFSPL LENQSPAPAA NSFHLGSQQP CAGASAGIGL  180
GNTIAQRQDH GSPTIQPLPV PQKKQEVQTR QTTGGSSGED SDDDDLEGDT GTNGAPADVK  240
RSRRCKTMLS NRESARRSRR RKQDQLNELE SQAGQLRDER TTLLSRLTDV NHKCDEASVD  300
NRVLKANIET LRAKVKMAEE QVKRVTGLNP LLLARSNVPS MGMHHQYTGG TPNHQSFHHP  360
PPNMAPSVPP PHMQQPMHYP RNNVTPVTAN SHGVSGMNHN MGGMNSMPFR ANEHNRVADV  420
VAPPMQKPVG PGVNPRPVDT SGLGIHGVAK VDKKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255262RRSRRRKQ
2257262SRRRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024847
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012092128.16e-99light-inducible protein CPRF2
TrEMBLA0A067JC431e-97A0A067JC43_JATCU; Uncharacterized protein
STRINGLus100248470.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136911825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.12e-45basic leucine zipper 25