PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024812
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 275aa    MW: 29832.8 Da    PI: 7.8416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024812genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-1259105555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h   Er RR+r+++ f +L+ llP++   p  K +K++++ +A+ YIk Lq
  Lus10024812  59 HIWTERERRKRMRTMFTNLQALLPQL---P-SKADKSSVVDEAITYIKTLQ 105
                  5567*********************6...3.8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-1652116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-1352109No hitNo description
PROSITE profilePS5088814.31654104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-1558115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-1059105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1062110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEVMTKSRNS SSNSLVGCME PTPTTTTEET KVGKKRKAGS SSKNQDVGGD NDQSEQQVHI  60
WTERERRKRM RTMFTNLQAL LPQLPSKADK SSVVDEAITY IKTLQQTLQT LEKQKLEKLR  120
GGGIIIDSEP SSAVSVISAS EPTREAFLAS QGPSKLSTSN TTNAPLAAAA AAPSGFQTWF  180
SPNVVLNMCG DDAHICVCSV KKQGLFSTIL HILEKHSLDV VSVHVSTHHH NHSCTYMIHV  240
QAGARCSSQF PESLSAEDTF KLAAGEMNLW LLSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024812
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510191.28e-96transcription factor bHLH95
TrEMBLB9R7988e-94B9R798_RICCO; Uncharacterized protein
STRINGLus100248120.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-11bHLH family protein