PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10024669 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 519aa MW: 57855.4 Da PI: 7.4976 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl Lus10024669 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.7e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T++E++l++ ++ G++ W+ Ia++++ gRt++++k++w+++ Lus10024669 67 RGRFTPDEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89********************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-25 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.264 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.06E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.17E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.122 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.38E-11 | 69 | 112 | No hit | No description |
Pfam | PF03501 | 8.8E-43 | 342 | 433 | IPR005326 | Plectin/S10, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901430 | Biological Process | positive regulation of syringal lignin biosynthetic process | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TPDEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPP 120 PPSPSPPSLS SSSPLLLQTP PSIATQPPCT GSVSGATHHQ LVNITSYQTS THVLDPTHQP 180 EPGPRGTHLF PSAVQDAVFH PPPPLPSMFI FDGDHHHHHH QNQLFIEPVS GSWNDHNFHH 240 HNHNHNHPPP QQSHQPFGFL PPLFEHDGDH LVGSMEEVDQ EGTAGARTVM MNDEEWAAAV 300 DSRHEPSSGN NSFLFWEEND VVLDEGAIIR CGGDSNFTAA IISEKNRREI SKYLFQEGVC 360 YAKKDFNLAK HPDIDVPNLQ VIKLMQSFKS KEYVRETFAW MHYYWYLTNE GIEFLRAYLN 420 LPSEIVPATL KKQVKAGGRP QFGGDRPRGP PRSDGERRFG GDRDGYRSGP RAPGGDYGDK 480 GGAPADYRPT YGGSGPRAGF GRGGGSYSGG AATSSDLP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4v7e_BK | 9e-63 | 341 | 494 | 2 | 159 | 40S ribosomal protein S10E |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10024669 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022158473.1 | 1e-173 | transcription factor MYB39-like | ||||
TrEMBL | A0A1S3EF67 | 1e-161 | A0A1S3EF67_CICAR; transcription factor MYB102 | ||||
TrEMBL | A0A4D6LRY4 | 1e-161 | A0A4D6LRY4_VIGUN; Myb proto-oncogene protein | ||||
STRING | Lus10024669 | 0.0 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63910.1 | 2e-83 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Lus10024669 |