![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10024603 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 248aa MW: 27883.6 Da PI: 7.406 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 207.1 | 6.3e-64 | 28 | 209 | 7 | 170 |
YABBY 7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...............lleelkveeenlksnveke 89 eq+Cyv+Cn C+t+lavsvPs+s fk+vtvrCGhCt+ll vn++ + l ++ ++ ++ +++ ++ + ++ Lus10024603 28 EEQLCYVHCNICDTVLAVSVPSSSWFKTVTVRCGHCTHLLPVNMMRPNFLPTSPTPMNPPFQLFspttttqldefssnpNANTPSPPPSQSLLMFNNQ 125 69******************************************998866665555443332222223332222222212222222222211111222 PP YABBY 90 esastsvssekl.............senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++++ e+pr+p v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl Lus10024603 126 -----------IndfefqsaarfapDHHQHLELPRPPLfVNRPPEKRQRVPSAYNRFIKEEIQRIKAENPDISHREAFSAAAKNWAHFPHIQFGL 209 ...........1333444444456577788899998879******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.3E-65 | 27 | 209 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.84E-9 | 150 | 203 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 9.4E-6 | 157 | 203 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 4.07E-6 | 163 | 199 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MSMSSMTLSL DHHYQQQQQQ QLPPSPPEEQ LCYVHCNICD TVLAVSVPSS SWFKTVTVRC 60 GHCTHLLPVN MMRPNFLPTS PTPMNPPFQL FSPTTTTQLD EFSSNPNANT PSPPPSQSLL 120 MFNNQINDFE FQSAARFAPD HHQHLELPRP PLFVNRPPEK RQRVPSAYNR FIKEEIQRIK 180 AENPDISHRE AFSAAAKNWA HFPHIQFGLM PDQPLKKKAN TLLHHPPQEA EGGFFSSANV 240 GVAAAPY* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10024603 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021666324.1 | 2e-78 | protein YABBY 4-like | ||||
Swissprot | Q01JG2 | 2e-59 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 2e-59 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A061G3I5 | 1e-75 | A0A061G3I5_THECC; Plant-specific transcription factor YABBY family protein | ||||
STRING | Lus10024603 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-58 | YABBY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10024603 |
Publications ? help Back to Top | |||
---|---|---|---|
|