PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024279
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 164aa    MW: 18265.5 Da    PI: 5.2233
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024279genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.18e-133588558
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58
                 ++ +r+q+NRe+ArrsR RK++ ++ L   v +L +eN++    ++  +++  +
  Lus10024279 35 RKRKRMQSNRESARRSRMRKQKHLDDLVVQVSQLRKENSQILAAVNVTTQHFLN 88
                 6789**********************************9988777766666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.6E-183195IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.4043396IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-103380No hitNo description
SuperFamilySSF579596.13E-123587No hitNo description
PfamPF001704.8E-103578IPR004827Basic-leucine zipper domain
CDDcd147023.16E-213686No hitNo description
PROSITE patternPS0003603853IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MASSSGNSSS PGGSSSVLLN SGSDEDLQQL VMDERKRKRM QSNRESARRS RMRKQKHLDD  60
LVVQVSQLRK ENSQILAAVN VTTQHFLNVE ADNSVLRAQI VELTHRLDSL TEILDFMGNG  120
PCSWETDQVV VDCIQPAESF LNNPLNSIYL NQPIMASPDL FQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13455RKRKRMQSNRESARRSRMRKQK
24754RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024279
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048821.14e-65PREDICTED: ocs element-binding factor 1-like
SwissprotC0Z2L56e-52BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A067KQY29e-63A0A067KQY2_JATCU; Uncharacterized protein
TrEMBLB9H4F38e-63B9H4F3_POPTR; BZIP family protein
STRINGLus100242791e-117(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.13e-48basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]