PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024241
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 92aa    MW: 10440.7 Da    PI: 8.5254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024241genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.96.3e-0722601754
                 HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH 17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  +   +L++llP+ + + +s K+s   +L+++++YI+sL
  Lus10024241 22 LDLVTKLQQLLPElRNRRRSDKVSAENVLQETCNYIRSL 60
                 566679*******777999999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-7580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.915560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-81978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-42160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRTRS SGSSRITDDQ ILDLVTKLQQ LLPELRNRRR SDKVSAENVL QETCNYIRSL  60
HREVDDLSER LSGLLETTDS AQAVLIRDLL N*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20305124}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024241
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by exogenous gibberellin. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022736077.11e-42transcription factor PRE3-like
SwissprotF4JCN92e-37PRE4_ARATH; Transcription factor PRE4
TrEMBLA0A2I4DG942e-39A0A2I4DG94_JUGRE; transcription factor PRE3-like
TrEMBLA0A2I4DMW12e-39A0A2I4DMW1_JUGRE; transcription factor PRE3-like
STRINGLus100242413e-56(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.18e-35activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]