PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024177
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 494aa    MW: 55602.7 Da    PI: 6.241
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024177genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS451.45.7e-138654901374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL +cA+ v++g+ e+a+  L ++s+lasp+gd+mqR+aayfteALa r+++ +++ly+al++++t+  + see+ ++klf+e++P+lk+s++++
  Lus10024177  65 LIQLLHACANQVAAGSVENANIGLGHISHLASPEGDTMQRIAAYFTEALADRMLKIWPGLYNALNSTKTR--SASEEILVQKLFFELCPFLKLSYVIT 160
                  689*************************************************************999998..599*********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaI+ea+ege+++HiiD+++s+++QW+ Ll++L++Rpegpp+lRiTg+++    +ke l ++g rL + Ae+l++pf+fn  ++++le+l+le+Lrv
  Lus10024177 161 NQAIVEAMEGEKMIHIIDLNASEPAQWIELLRTLSARPEGPPHLRITGIHE----QKEVLDQMGVRLVEEAEKLDIPFQFNS-IVSTLETLDLERLRV 253
                  ***************************************************....9**************************.79************* PP

         GRAS 197 kpgEalaVnlvlqlhrll...........................................................desvsles..erdevLklvks 233
                  k+gEalaV++vlqlh+ l                                                               sl+   +  ++L+ +++
  Lus10024177 254 KTGEALAVSSVLQLHNYLatdeevvtrgfpsaskssshnnhiqklmqmkqnqktlgewlendmvqyhssspdsalspL---SLAPspNMGTFLSSLWG 348
                  ***********************************************************************9996642...3322335788******* PP

         GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                  lsPk++vv+eqe+dhn++s+ +r++ea+++y+alfd+l +++ pr+s er+kvE++llg+ei+n++aceg er+erhe+lekW +rle aGF+ vpls
  Lus10024177 349 LSPKIMVVTEQESDHNGHSLTDRVSEAMNFYAALFDCLeSSTDPRASMERQKVEKMLLGKEIKNIIACEGIERKERHEKLEKWIMRLELAGFGRVPLS 446
                  **************************************766779999*************************************************** PP

         GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++ + qa++ll+ ++  gy++++++g+l+++W+drpL+s+SaWr
  Lus10024177 447 YDGMWQANRLLQSYNYGGYKIKDKNGCLLICWHDRPLYSISAWR 490
                  *******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.73739470IPR005202Transcription factor GRAS
PfamPF035141.9E-13565490IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MPELTFRVLS CLSTSFLMAG NLQEDRSSVT SSPLQLFSWM SLSPGLGSPF PWLRDLQPEE  60
RGLCLIQLLH ACANQVAAGS VENANIGLGH ISHLASPEGD TMQRIAAYFT EALADRMLKI  120
WPGLYNALNS TKTRSASEEI LVQKLFFELC PFLKLSYVIT NQAIVEAMEG EKMIHIIDLN  180
ASEPAQWIEL LRTLSARPEG PPHLRITGIH EQKEVLDQMG VRLVEEAEKL DIPFQFNSIV  240
STLETLDLER LRVKTGEALA VSSVLQLHNY LATDEEVVTR GFPSASKSSS HNNHIQKLMQ  300
MKQNQKTLGE WLENDMVQYH SSSPDSALSP LSLAPSPNMG TFLSSLWGLS PKIMVVTEQE  360
SDHNGHSLTD RVSEAMNFYA ALFDCLESST DPRASMERQK VEKMLLGKEI KNIIACEGIE  420
RKERHEKLEK WIMRLELAGF GRVPLSYDGM WQANRLLQSY NYGGYKIKDK NGCLLICWHD  480
RPLYSISAWR HRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-385949213381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024177
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021682816.10.0scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A067KWA80.0A0A067KWA8_JATCU; GRAS23 protein
STRINGLus100241770.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]