PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024036
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 553aa    MW: 64002.4 Da    PI: 9.6922
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024036genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.2e-07346381341
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 
                      +WT+eE ++ ++  k++G + Wk  a+ +g  +t+ ++k
      Lus10024036 346 KWTEEERDIVLKHYKKHGAN-WKPLAEAFG--KTRLHVK 381
                      8*****************99.********8..7888888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.008266339IPR017877Myb-like domain
SMARTSM007170.013270341IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-7273359IPR009057Homeodomain-like
SMARTSM007171.6343390IPR001005SANT/Myb domain
SuperFamilySSF466896.08E-7344401IPR009057Homeodomain-like
PROSITE profilePS500905.726346377IPR017877Myb-like domain
PfamPF139211.4E-10347404No hitNo description
Gene3DG3DSA:1.10.10.601.4E-5360396IPR009057Homeodomain-like
PROSITE profilePS500907.828389457IPR017877Myb-like domain
SMARTSM007172.3E-4393459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-8397458IPR009057Homeodomain-like
SuperFamilySSF466899.8E-5437518IPR009057Homeodomain-like
PROSITE profilePS500906.272459512IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MGKLDRQSRK KQKRVKGNDL VDSTSGMDLS EVEHGVVSSN RIEAGNFNSP NERRKKKKRK  60
KHGNDQMVMN EELGDAGAVV REEKENGGKD RSGIVNLNCK SSNDKEEAKE KKKKNKKKKV  120
KRNIDTEAVL KEARVGSNEA DGKDIRYNGD SRGEPAVENS EKEKEDEKKK KRKKKDKDKK  180
KKQVVVEEPI LQENSVGDDE AATKELESTE YSKDRTKDKK RKKKKQSTDV GKRVEINTDA  240
PKSSLPKSTS KRVSFDEDLE VLTSSNDLVR GKRFTAEEDK LVQDACRAYV YSKDLGDEGI  300
QMILNCMKHK RTNNCWKEIC AAIPWRPHES VRYRAHILFE RGESRKWTEE ERDIVLKHYK  360
KHGANWKPLA EAFGKTRLHV KDAHGRFKFE NLKKGRWTQD EVEKVYDLVN TNLKMKAFEE  420
RKSQHGMCKD NICWGTISEK LKTRNHSNCS QKWYRQLASP MVEQKKWVDM DDYRLAIELY  480
NLDACCMEDV DWDCLLEHRS GDVCRKRWNE MVKHLGDCSN KSFSEQVEIL AKRYIPDVLE  540
ASEAYYSKPV AD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15157ERRKKKK
25258RRKKKKR
35260RRKKKKRKK
45358RKKKKR
5110121KKKKNKKKKVKR
6161170KEKEDEKKKK
7167172KKKKRK
8167174KKKKRKKK
9167181KKKKRKKKDKDKKKK
10168181KKKRKKKDKDKKKK
11171176RKKKDK
12218222KKRKK
13218224KKRKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024036
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8883441e-139HQ888344.1 Linum usitatissimum clone GMU2AYZ01AML72 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628039.11e-140RNA polymerase I termination factor-like isoform X1
RefseqXP_021628040.11e-141RNA polymerase I termination factor-like isoform X2
TrEMBLA0A2C9V1G51e-140A0A2C9V1G5_MANES; Uncharacterized protein
TrEMBLA0A2C9V1K81e-138A0A2C9V1K8_MANES; Uncharacterized protein
TrEMBLA0A2P2JN051e-140A0A2P2JN05_RHIMU; Myb family transcription factor family protein
STRINGLus100240360.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-109MYB_related family protein