PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10024031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 228aa MW: 25837.1 Da PI: 6.6874 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.6 | 1.2e-19 | 64 | 116 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k Lus10024031 64 KRKLTDEQVTSLELNFGNEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWK 116 5689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.8 | 1.5e-38 | 63 | 154 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+l++eqv++LE +F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+ktk+lE++y++Lk+++d ++ +++rLe+ev +L+e+l+e Lus10024031 63 KKRKLTDEQVTSLELNFGNEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKTKKLEEEYSKLKSSHDLITLHKCRLESEVLQLKEQLTE 154 9****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.52 | 58 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.9E-17 | 61 | 122 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.18E-17 | 62 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.27E-15 | 63 | 119 | No hit | No description |
Pfam | PF00046 | 5.9E-17 | 64 | 116 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-20 | 65 | 125 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.0E-5 | 89 | 98 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 93 | 116 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 98 | 114 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MDDLSCNILI YPAAVYDPQP LLLPHPHQGY LSTGGEEPNQ KAAGRRRRRK KKEQSGGEGS 60 MLKKRKLTDE QVTSLELNFG NEHKLESERK DRLAAELGLD PRQVAVWFQN RRARWKTKKL 120 EEEYSKLKSS HDLITLHKCR LESEVLQLKE QLTEAEKEIQ RLSMITERSA DVASSNSPSS 180 SLTTMDPQQQ FFGGGGGFGG VEDQYQDVLY SMPESAYVVN GMEWVYM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 51 | RRRRKKK |
2 | 45 | 52 | RRRRKKKE |
3 | 47 | 52 | RRKKKE |
4 | 49 | 65 | KKKEQSGGEGSMLKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10024031 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010437310.1 | 2e-62 | PREDICTED: homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | O23208 | 2e-59 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A0D2TIR8 | 1e-59 | A0A0D2TIR8_GOSRA; Uncharacterized protein | ||||
STRING | Lus10024031 | 1e-169 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 1e-45 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Lus10024031 |
Publications ? help Back to Top | |||
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