PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024014
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 598aa    MW: 65394.2 Da    PI: 4.8351
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024014genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3703.3e-1132295972374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   + LlecA+ +s++++e a + L +++e +s++gdp++R+a yfteAL +rl++   +  + + + et+   s+e + ++k +++++P+ kf+hltaN
  Lus10024014 229 LKSLLECAR-LSESETESAVKSLVKIRESVSEHGDPTERVAYYFTEALYNRLSK---QAGENFIMFETT---SDEFTLSYKSLNDACPYSKFAHLTAN 319
                  578******.56668899999999*****************************9...666666677776...899*********************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  qaIlea+e++ ++Hi+Df++ qG+QW+aLlqaLa+R++g+p  +Ri g+ +p+ g   + +l +tg+rL +fA+ l+++fef++ + + ++dl+ + +
  Lus10024014 320 QAILEATETAAKIHIVDFGVVQGVQWAALLQALATRSAGKPaLVRISGIPAPALGssPAASLFATGKRLLDFAKLLDLNFEFEP-ILTPTQDLNESCF 416
                  *************************************6666499********999889999***********************.7999********* PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  rv+p+E+laVn++lql++lldes+++ +   + L++ ksl+P++v++ e e+++n+  +l+rf +al+yysa+f+sle +l+r+s er  vEr+llgr
  Lus10024014 417 RVEPDEVLAVNFMLQLFNLLDESTATVE---TALRMAKSLNPRIVTLGEYEVSLNRIGYLTRFNNALRYYSAVFESLEPSLSRDSTERLEVERMLLGR 511
                  **********************999999...9****************************************************************** PP

         GRAS 293 eivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  +i  v+  e+    +rer+e  e+Wr  +e++GF+pv+ls++a++qak ll +++ s  y++ e++  ++ l Wk+ pL++vS+Wr
  Lus10024014 512 RIAGVIGPEEPGvvKRERMEDREQWRLLMEMCGFEPVALSNYAMSQAKILLWNYNySPRYSLVESKPGFIsLAWKEVPLLTVSSWR 597
                  *******99877669****************************************9999******999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.906202575IPR005202Transcription factor GRAS
PfamPF035141.1E-110229597IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QKQQREQEQQ QKNHNQQQQQ QILGMTTSFP LTPWPASTPA  60
NPNLGYGLSA APGFSDPFQV PPATDAAEVG FPFPQINHHA GGGGTGFRFS DFGGGAPGEF  120
DSDSNPADFC LYGSDSFRLN VACSPSSDLN RILFPEPALK AQNPIQPLPT WNPPSSPPPP  180
PEAAAGAAVK EVKSANTSPP PPPPVPKPPA GPTVCSNLLE IEPSSPPLLK SLLECARLSE  240
SETESAVKSL VKIRESVSEH GDPTERVAYY FTEALYNRLS KQAGENFIMF ETTSDEFTLS  300
YKSLNDACPY SKFAHLTANQ AILEATETAA KIHIVDFGVV QGVQWAALLQ ALATRSAGKP  360
ALVRISGIPA PALGSSPAAS LFATGKRLLD FAKLLDLNFE FEPILTPTQD LNESCFRVEP  420
DEVLAVNFML QLFNLLDEST ATVETALRMA KSLNPRIVTL GEYEVSLNRI GYLTRFNNAL  480
RYYSAVFESL EPSLSRDSTE RLEVERMLLG RRIAGVIGPE EPGVVKRERM EDREQWRLLM  540
EMCGFEPVAL SNYAMSQAKI LLWNYNYSPR YSLVESKPGF ISLAWKEVPL LTVSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1522255971375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10024014
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075848.10.0scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A067KR640.0A0A067KR64_JATCU; GRAS22 protein
STRINGLus100240140.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-170GRAS family protein