PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023926
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family E2F/DP
Protein Properties Length: 357aa    MW: 38500.9 Da    PI: 9.2545
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023926genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.44.5e-2795179271
      E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse..................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  ++++Lr++++k   ++ek+++ g++t+neva+eLv+e                  d+kn+rRR+YD+lNVL+al++i+k +k+ei+wkg
  Lus10023926  95 SGRGLRQFSMK---VCEKVQSkGTTTYNEVADELVAEfadpggaaagpdqvvpqfDEKNIRRRVYDALNVLMALDIISK-DKKEIHWKG 179
                  689********...*****999*********************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094048.4E-1201356IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.103.0E-4290185IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.5E-3294179IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.1E-2496179IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.48E-2097180IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.86E-38184287IPR014889Transcription factor DP, C-terminal
SMARTSM011387.0E-57186354IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440746.28E-38186298No hitNo description
PfamPF087816.0E-37187298IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MATGGGACQD DRILSAASAR TRSWGTATAS GGGGGGQSVS TSGSVGSPSN AATPASDSTY  60
LRINNLDIHA DDAATQDAAN KKKKRGQRAV GADKSGRGLR QFSMKVCEKV QSKGTTTYNE  120
VADELVAEFA DPGGAAAGPD QVVPQFDEKN IRRRVYDALN VLMALDIISK DKKEIHWKGL  180
PRTSQSDIQE KKSEKISFRN RNEKKAQYLK EMEDQYLGLQ NLIQRNNQLY SSGNAPSGGV  240
SLPFILVQTR PHATVEVEIS EDMQLVHFDF NSTPFELHDD NYVLKAMKLG ERPPHNNGST  300
PNMVVSGGSS MNHQQQQQQQ LIPPPITQNT PVRAAAPAPT SPPIPGIIKV RSRNEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-3788184193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023926
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021669096.11e-166transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-141DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A067JYW61e-162A0A067JYW6_JATCU; Uncharacterized protein
STRINGLus100239260.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-128Transcription factor DP