PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023857
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 387aa    MW: 42713.2 Da    PI: 8.5804
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023857genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.87.6e-26252302156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k+r++W+peLH+rF     qLGGs+ AtPk+i+e+m+v+gLt+++vkSHLQkYRl+
  Lus10023857 252 KQRRCWSPELHRRF-----QLGGSQAATPKQIREIMQVDGLTNDEVKSHLQKYRLH 302
                  79************.....9**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-13250305IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-23251306IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-20252302IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSSVPAELSS SLFDFRTMMS SPSSKFVPIG DFLRTTMIGD AKVAEKTARS SLPRAESLLR  60
ELQEEMRRID HAKIQLPLCM LLLNDAMMLV KESVKREKPL VLEEFIPLKK DEECKDDDRL  120
VKAEKDSCKD KKSWMSSVQL WSSDDTRQKI NKKGDRCGNE DTFSASKNWT PVNLPIKNVA  180
KLSSTKEESG REEDLAARSL SLQTPGMKNL SEESGSTGSR VTSSRGGISS SAPNSQSSSH  240
KGPILPLQPC RKQRRCWSPE LHRRFQLGGS QAATPKQIRE IMQVDGLTND EVKSHLQKYR  300
LHTRRMAPAG TAPGNQSLVV LGGLWMSQEQ YAESSKAASS QSGSPPGPLE FGTTLMDEDE  360
DEDDAKSENY SWKSLTPRSG TGRAGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023857
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021651667.11e-116transcription factor HRS1-like isoform X1
RefseqXP_021651668.11e-116transcription factor HRS1-like isoform X2
RefseqXP_021651669.11e-117transcription factor HRS1-like isoform X3
TrEMBLA0A067L2E91e-110A0A067L2E9_JATCU; Uncharacterized protein
STRINGLus100238570.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-31G2-like family protein