PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10023829

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 382aa MW: 42153.5 Da PI: 9.7651

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10023829	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.2	9.3e-06	153	178	6	30
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR ri +++ +L++l+P+ + Lus10023829 153 SIAERVRRTRISERMRKLQDLVPNmD 178 689********************955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.626	147	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.51E-6	150	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-5	152	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00177	0.0032	163	343	No hit	No description
PROSITE profile	PS51419	34.46	164	381	No hit	No description
PRINTS	PR00449	3.3E-39	178	199	No hit	No description
TIGRFAMs	TIGR00231	9.6E-35	179	334	IPR005225	Small GTP-binding protein domain
SMART	SM00175	2.5E-102	179	341	No hit	No description
SuperFamily	SSF52540	2.02E-55	179	347	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00173	1.1E-23	179	341	No hit	No description
CDD	cd01868	2.99E-119	179	339	No hit	No description
Pfam	PF00071	7.5E-60	179	339	IPR001806	Small GTPase superfamily
SMART	SM00174	8.6E-11	180	337	No hit	No description
SMART	SM00176	3.8E-5	183	375	No hit	No description
Gene3D	G3DSA:3.40.50.300	5.2E-68	183	381	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00449	3.3E-39	201	217	No hit	No description
PRINTS	PR00449	3.3E-39	219	241	No hit	No description
PRINTS	PR00449	3.3E-39	281	294	No hit	No description
PRINTS	PR00449	3.3E-39	316	338	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007264	Biological Process	small GTPase mediated signal transduction
GO:0005525	Molecular Function	GTP binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MKSYTNSSNR SEASRRQRSP LSFLSRSSSS VAMLSSELEH DQSLSPTSSD HAKNLVDGRF 60 YVTDAAGFPS YGSWNESSSQ FTDTLTAQHH SHQSGGSQLG RLSHHLRLPK NVGSCGGASG 120 EIMGAAIDKF LLFQDSVPCK IRAKRGFATH PRSIAERVRR TRISERMRKL QDLVPNMDKV 180 VLIGDSAVGK SQLLARFARN EFSIDSKATI GVEFQTKTLS IDNKTVKAQI WDTAGQERYR 240 AVTSAYYRGA VGAMLVYDMT KRQSFDHMAR WLEELRGHAD KNIVIMLIGN KSDLGSLRAV 300 PQEDAQEFAQ RENLFFMETS ALESTNVETA FLTVLTEIYR IISKKTLTAN NELDPNSGLL 360 KGTRIIVPGQ DTDSGKRGGC C*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MKSYTNSSNR SEASRRQRSP LSFLSRSSSS VAMLSSELEH DQSLSPTSSD HAKNLVDGRF  60
YVTDAAGFPS YGSWNESSSQ FTDTLTAQHH SHQSGGSQLG RLSHHLRLPK NVGSCGGASG  120
EIMGAAIDKF LLFQDSVPCK IRAKRGFATH PRSIAERVRR TRISERMRKL QDLVPNMDKV  180
VLIGDSAVGK SQLLARFARN EFSIDSKATI GVEFQTKTLS IDNKTVKAQI WDTAGQERYR  240
AVTSAYYRGA VGAMLVYDMT KRQSFDHMAR WLEELRGHAD KNIVIMLIGN KSDLGSLRAV  300
PQEDAQEFAQ RENLFFMETS ALESTNVETA FLTVLTEIYR IISKKTLTAN NELDPNSGLL  360
KGTRIIVPGQ DTDSGKRGGC C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fbl_B	2e-84	179	381	18	218	Ras-related protein Rab-11A
5fbq_B	2e-84	179	381	18	218	Ras-related protein Rab-11A
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Intracellular vesicle trafficking and protein transport. Plays an important role in the regulation of pollen tube tip growth. {ECO:0000269\|PubMed:19208902}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10023829

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002532404.1	1e-135	ras-related protein RABA4d
Swissprot	Q9LH50	1e-131	RAA4D_ARATH; Ras-related protein RABA4d
TrEMBL	A0A1Q3B817	1e-177	A0A1Q3B817_CEPFO; HLH domain-containing protein/Ras domain-containing protein
STRING	Lus10023829	0.0	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-32	bHLH family protein

Link Out ? help Back to Top
Phytozome	Lus10023829

Publications ? help Back to Top
Vernoud V,Horton AC,Yang Z,Nielsen E Analysis of the small GTPase gene superfamily of Arabidopsis. Plant Physiol., 2003. 131(3): p. 1191-208 [PMID:12644670] Lee YJ,Szumlanski A,Nielsen E,Yang Z Rho-GTPase-dependent filamentous actin dynamics coordinate vesicle targeting and exocytosis during tip growth. J. Cell Biol., 2008. 181(7): p. 1155-68 [PMID:18591430] Hwang JU,Vernoud V,Szumlanski A,Nielsen E,Yang Z A tip-localized RhoGAP controls cell polarity by globally inhibiting Rho GTPase at the cell apex. Curr. Biol., 2008. 18(24): p. 1907-16 [PMID:19108776] Szumlanski AL,Nielsen E The Rab GTPase RabA4d regulates pollen tube tip growth in Arabidopsis thaliana. Plant Cell, 2009. 21(2): p. 526-44 [PMID:19208902] Kato N,He H,Steger AP A systems model of vesicle trafficking in Arabidopsis pollen tubes. Plant Physiol., 2010. 152(2): p. 590-601 [PMID:19933386] Feng QN, et al. Arabidopsis RhoGDIs Are Critical for Cellular Homeostasis of Pollen Tubes. Plant Physiol., 2016. 170(2): p. 841-56 [PMID:26662604]