PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023822
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 491aa    MW: 54121.1 Da    PI: 8.1851
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023822genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1331.3e-10201238744
                  HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                   rr+++NReAAr+sR+RKka++++Le    +L++  ++
  Lus10023822 201 LRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQE 238
                  69************************866666655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS502178.657197241IPR004827Basic-leucine zipper domain
CDDcd147081.21E-20199245No hitNo description
SuperFamilySSF579594.0E-7200241No hitNo description
PfamPF001709.1E-8201238IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-7202242No hitNo description
PROSITE patternPS000360202217IPR004827Basic-leucine zipper domain
PfamPF141445.3E-30290364IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MAAANKVMEQ QQQQQQQNYE FQQQQDVGGG GAYDLGELDQ ALLMYLDGQQ QQQQQHDPTV  60
PILPHHNQQG GIMSSSSTSS STRPPPTLNI FPSHPMYTKI NNGTSTGSPP PHHHHGVGVS  120
SVIAVTSTPT GPKRPSSSSS SPSPSTYPAA AARPSTSQPA PKSIKVTPSQ HQGPKTPDPK  180
VSVVLSGSMI LLGFRAHPQT LRRLAQNREA ARKSRLRKKA YVQQLESSRI KLSQLEQELH  240
RARSQGMFLG GGGGIFGGDQ NLPLVSNIST DAAMFDMEYG RWLEEHHRLT CELRAAVDEH  300
LPENELRMYV DNCLAHYDVV LNLKGMVAKS DVFHLVSGVW KSPAERCFMW IGGFRPSELI  360
KIIANQIEPL TEQQILGICG MQQSTQEAEE ALSQGVEALN QSLSETIAAD SLSCQPNMAN  420
YMGQMAMAIN KLSTFEAFVR QADNLRHQTL HQLHQILTTR QAARCFLAIA EYFHRLRALS  480
SLWLSRPRQD *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023822
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1744451e-150JX174445.1 Linum usitatissimum clone LuBAC364K11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018503110.10.0PREDICTED: transcription factor TGA2.3-like
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A2H5Q7M00.0A0A2H5Q7M0_CITUN; Uncharacterized protein
TrEMBLA0A498HYB50.0A0A498HYB5_MALDO; Uncharacterized protein
TrEMBLV4TKH30.0V4TKH3_9ROSI; Uncharacterized protein
STRINGLus100238220.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47313455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.11e-136bZIP family protein