PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10023591 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | LBD | ||||||||
Protein Properties | Length: 159aa MW: 17926.7 Da PI: 6.5016 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 32.8 | 2e-10 | 8 | 113 | 1 | 98 |
DUF260 1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer........edamsslvyeAearardPvyGavgvilklqqqleq 89 +C+ Ck+ r+ +C+++C+++ fp e +f+ v l+G + + l +++++ ++ ++sl+ + r ++ v G+ g i+ l+ + ++ Lus10023591 8 RCQKCKYSRKaECPDGCPFRDFFPPEG-DNFQQVIGLYGKGTSSALSHQMDQLPPtlfpnfhnNAYFNSLTVDGGLRRDNRVVGSSGNIQVLEMERHH 104 6*********99************987.89*********988877777763333233355555999**************************999988 PP DUF260 90 lkaelallk 98 lk+ ++ + Lus10023591 105 LKQGQQYFQ 113 887666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 8.702 | 7 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.8E-10 | 8 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MAHQGAQRCQ KCKYSRKAEC PDGCPFRDFF PPEGDNFQQV IGLYGKGTSS ALSHQMDQLP 60 PTLFPNFHNN AYFNSLTVDG GLRRDNRVVG SSGNIQVLEM ERHHLKQGQQ YFQNEANLAH 120 AQNAILSAAN EELVYENNWF RNQHPDENPP PFHDPGNQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10023591 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10023591 | 1e-116 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-10 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Lus10023591 |