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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lus10023543 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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| Family |
BBR-BPC |
| Protein Properties |
Length: 296aa MW: 32915.5 Da PI: 9.9565 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lus10023543 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 335.2 | 1.7e-102 | 1 | 295 | 1 | 301 |
GAGA_bind 1 mdddgsrernkg.yyepaaslkenlglqlmssiaerdaki....rernlalsekka...avaerd.........maflqrdkalaernkalverdnkl 81
mddd+ + rn+g yyep+ ++ +l+lql s +++rd+k r++n + + +a +++rd +++ +rd+++++r nk+
Lus10023543 1 MDDDALNMRNWGgYYEPS--FRGHLSLQLTSNMTDRDTKHflpgRNANNIMLDVNAgggGFHPRDfmlseshvpINY-MRDSWINQR------DSNKY 89
9***9999****9***99..***********************977776565555411168***********99999.9*******4......46788 PP
GAGA_bind 82 lalllvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpi.eeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
+ll +++ + +v ++t+ ++ lq p l+ s v+ r+ + ++ e+ +++ e++ +kkrq + ++k++kakk++k ++++ ++
Lus10023543 90 PNLLAPNHN-------YAHVFPETSGAHPLQV--LPALDTSMVGgSRDDG--KMCKVeEQVFDKEPEHQPTKKRQGSGVAKAPKAKKPRK-PKDP-NS 174
888887876.......6677888999988777..5667777777333333..33333034445555666667777788888888888888.3222.22 PP
GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaae 275
++ ++ +k +kks+++v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekLaae
Lus10023543 175 --NPV-QRAAKPPKKSMEMVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAE 269
..222.34689*************************************************************************************** PP
GAGA_bind 276 GydlsnpvDLkdhWAkHGtnkfvtir 301
Gy++snp+DL++hWAkHGtnkfvtir
Lus10023543 270 GYNFSNPIDLRTHWAKHGTNKFVTIR 295
*************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MDDDALNMRN WGGYYEPSFR GHLSLQLTSN MTDRDTKHFL PGRNANNIML DVNAGGGGFH 60
PRDFMLSESH VPINYMRDSW INQRDSNKYP NLLAPNHNYA HVFPETSGAH PLQVLPALDT 120
SMVGGSRDDG KMCKVEEQVF DKEPEHQPTK KRQGSGVAKA PKAKKPRKPK DPNSNPVQRA 180
AKPPKKSMEM VINGIDMDIS GIPIPVCSCT GTPQQCYRWG CGGWQSACCT TNVSMYPLPM 240
STKRRGARIA GRKMSQGAFK KVLEKLAAEG YNFSNPIDLR THWAKHGTNK FVTIR*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
