PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10023434 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | LBD | ||||||||
Protein Properties | Length: 156aa MW: 17761.2 Da PI: 5.2735 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.7 | 3.8e-38 | 7 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +Ca+Ck+lrr+Ca+dCvlapyfp ++p++f+ vhk+FGasn+++ll+++p e+r +a++++ +eA arar+PvyG++g+i++lqq++ +++ e++ + Lus10023434 7 RCAGCKYLRRRCAQDCVLAPYFPPDNPQRFESVHKIFGASNLTRLLQEVPVETRGKAADCMSFEASARAREPVYGCAGMIHELQQEILKVQFEVENI 103 6****************************************************************************************99998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.415 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-37 | 7 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MSSNGRRCAG CKYLRRRCAQ DCVLAPYFPP DNPQRFESVH KIFGASNLTR LLQEVPVETR 60 GKAADCMSFE ASARAREPVY GCAGMIHELQ QEILKVQFEV ENIEGMLALH RAEHQLLVMR 120 QQEKKNMLLD DDDVDFGGHY NLDLEGDDQF LWQLT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-33 | 5 | 101 | 9 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-33 | 5 | 101 | 9 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10023434 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316444.3 | 4e-50 | LOB domain-containing protein 24 | ||||
TrEMBL | A0A2K1YZY8 | 6e-49 | A0A2K1YZY8_POPTR; Uncharacterized protein (Fragment) | ||||
STRING | Lus10023434 | 1e-113 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26620.1 | 2e-41 | LOB domain-containing protein 23 |
Link Out ? help Back to Top | |
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Phytozome | Lus10023434 |