PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023102
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 115aa    MW: 12133.7 Da    PI: 9.4965
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023102genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.67.4e-092283056
          AP2 30 rfslgkfgtaeeAakaaiaarkklege 56
                 r++lg++++ae Aa a+++a+ kl+ge
  Lus10023102  2 RVWLGTYDSAEAAAYAYDRAAYKLRGE 28
                 79***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.933135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-15236IPR001471AP2/ERF domain
PfamPF008471.8E-5228IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-11236IPR016177DNA-binding domain
SMARTSM003803.7E-5241IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MRVWLGTYDS AEAAAYAYDR AAYKLRGEYA RLNFPNLKDD DPVKLGFADS AKLNSLRSTV  60
DAKIQSICQK LKRERAKIGA GGGDSGGGGN GCRRRVVAGE DAVIRSGVDM GGSC*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023102
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605731.19e-33PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W22e-20ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A0D2SCX02e-31A0A0D2SCX0_GOSRA; Uncharacterized protein
STRINGLus100231021e-76(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-21ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]