PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10023079
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 239aa    MW: 27691.5 Da    PI: 8.9616
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10023079genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.6e-121599998
                 HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 +  + + l+lpk+f++++ g+    ++  tl  +   +We+++  + +s+  + ++GW+ F++   L  g ++ Fk+ g ++f  +v+vf+
  Lus10023079 15 SLQA-KKLMLPKSFTRSYwGNA---PTRATLLLPGRGRWEMEVFEDDRSRVWLQGAGWEAFARFYSLAHGYILQFKYRGGTKF--FVRVFS 99
                 4444.45***********5444...4459999999********5455554455569********************9876666..999997 PP
2B346.95e-15139223187
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr 87 
                  ff ++++ +++k  +  +p++f +++  ++ +s+tl++ +   + W+v+l  ++++g+     l++GW eF ++n L++gD +vF+l ++
  Lus10023079 139 FFEATLSTSHFKYFQAHIPRRFSKKYIAESDQSVTLKMGN---QAWDVNL--NRQGGEtryPKLSAGWTEFSRDNSLRVGDKCVFQLLRK 223
                  666677888999999***********55556887777766...9******..55555555789***********************8764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-155101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.1236101IPR003340B3 DNA binding domain
SMARTSM010195.2E-67101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-137102IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-81799IPR003340B3 DNA binding domain
CDDcd100173.65E-111999No hitNo description
Gene3DG3DSA:2.40.330.108.7E-20134236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-17134235IPR015300DNA-binding pseudobarrel domain
CDDcd100172.48E-13138236No hitNo description
PROSITE profilePS5086313.14139238IPR003340B3 DNA binding domain
PfamPF023625.8E-12139223IPR003340B3 DNA binding domain
SMARTSM010197.6E-10140233IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MERVVRFPKV VIGESLQAKK LMLPKSFTRS YWGNAPTRAT LLLPGRGRWE MEVFEDDRSR  60
VWLQGAGWEA FARFYSLAHG YILQFKYRGG TKFFVRVFSL NCSEIKYPPP DLRSLDVEDD  120
PVDDSDDDEE LPVQSELPFF EATLSTSHFK YFQAHIPRRF SKKYIAESDQ SVTLKMGNQA  180
WDVNLNRQGG ETRYPKLSAG WTEFSRDNSL RVGDKCVFQL LRKVPHVLYF EVKIVRAD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10023079
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100230791e-177(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-12B3 family protein