PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10023002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 287aa MW: 32196.8 Da PI: 8.5578 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.5e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl Lus10023002 14 RGPWSPEEDAKLKDYIHKHGTGgNWIAFPHKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.8 | 2.2e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ Lus10023002 69 GEFSDDEDRIICTLFANIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.042 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.13E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.858 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MGRSPCCDKA NVKRGPWSPE EDAKLKDYIH KHGTGGNWIA FPHKAGLRRC GKSCRLRWLN 60 YLRPNIKHGE FSDDEDRIIC TLFANIGSRW SVIAAQLPGR TDNDIKNYWN TKLKKKLMGL 120 LPNPSHGRLP FHHPANFYPQ SSPLSSSVLS YSNNSSSSLS VDPSSMTSPI NPFKSNHGDY 180 NSSFNSTNAT MQRQQQPHYQ QQVKDGVLMF GSGGGTTEAS CSSSDGSSNI NVHHHHYRRQ 240 VNEFDYEAEQ LQQMSGFNQM EDYGFEEIKQ LVSTNSCCNN NSLLLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10023002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021682353.1 | 5e-96 | transcription factor RAX2-like | ||||
Swissprot | Q9SJL7 | 6e-76 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | A0A2P6RB18 | 5e-91 | A0A2P6RB18_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | Lus10023002 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 6e-77 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10023002 |
Publications ? help Back to Top | |||
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