PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022833
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 590aa    MW: 63612.7 Da    PI: 7.3342
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022833genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.14.9e-16346392455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Lus10022833 346 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 392
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.146342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.06E-17345396No hitNo description
SuperFamilySSF474598.9E-21345421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-21346403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-13346392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MNHYVPDFEM DDDHSLPTPS SSNFNGHKKS SASEDDIMEL LWQNGQVVVQ SQTQRSVKKP  60
SIGKEIRSSF HDHHRDPSPP HPAPHLFMQE DEMASWLHYP LPETNFDQDF CADLLYSSAP  120
CITGVSAATT ASAAANSGPS LPAAPPPPAP SHVRSFANQH LAIQSTAAVA ALRPPIPPPP  180
GRPDAVQNFS LFSRHRGAAV ARGSMAAGSE PSNSKSVVKE STVVDSSGTP AMLRQSSRVS  240
EAATVAVGSS CENVHGNGGG ASASAATTKT SKDVVTCEVT FSSSPGGSSS SAVPASTQNP  300
ATEDRKRKGR EEEAECHSED AEFESAEEKK QARGSTSTKR SRAAEVHNLS ERRRRDRINE  360
KMKALQELIP RCNKSDKASM LDEAIEYLKS LQLQVQMMSM GCSMVPMMFP GVQQYVPPMG  420
MGMGMGMGMS MGIDMGMNRP MMPFPNVLAG APLQPATHLG QRFPVPGFQM PPVMPPPDPS  480
RVQAANQPDL MMSAQGGAPT MGQQQRPPSF PDPYQQFLAL HQMQMPMQQN QPMPHPSMNK  540
RSSSPGAEQG DGHQSGRFLH FISPSVSKLK TITNYLMERP CWFRTTLAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350355ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022833
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021651420.11e-176transcription factor PIF1-like isoform X1
TrEMBLA0A2C9UNT21e-172A0A2C9UNT2_MANES; Uncharacterized protein
STRINGLus100228330.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-45phytochrome interacting factor 3-like 5