PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022620
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family E2F/DP
Protein Properties Length: 324aa    MW: 35504.7 Da    PI: 6.514
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022620genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.77.4e-2779161271
      E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  ++++Lr++++k   ++ek+e+ g +t+neva+eLv+e                d+kn+rRR+YD+lNVL+al++i+k +k+ei+wkg
  Lus10022620  79 SGRGLRQFSMK---VCEKVESkGSTTYNEVADELVAEfadpssnlavpdqpqfDEKNIRRRVYDALNVLMALDIISK-DKKEIHWKG 161
                  689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094045.0E-1205323IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.108.7E-4474166IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.7E-3578161IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.5E-2480161IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.58E-2081162IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144587.26E-38166269IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.09E-38168282No hitNo description
SMARTSM011381.4E-57168321IPR014889Transcription factor DP, C-terminal
PfamPF087812.2E-37169301IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAPGGTTTAS GGGQSVSTSG SVGSPSSQAV FVTTPASDIT HIRLNHLDIH ADDSATTQDA  60
AADNKKKKRG QRAVGADKSG RGLRQFSMKV CEKVESKGST TYNEVADELV AEFADPSSNL  120
AVPDQPQFDE KNIRRRVYDA LNVLMALDII SKDKKEIHWK GLPRTNLSDI DEIKAERLSA  180
RNRTEKKAHY LQELEDQFSA LEILIRRNEA LYSSGNAPSG GVSLPFILVQ TRPHATVEVE  240
ISEDMQLVHF DFNSTPFELH DDNYVLKAMK LLQLSDNNGQ TTNMVVNVDE GSSMHQHQHQ  300
HQLLPPASPP IPGIIKARVK HEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B7e-3872163190PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022620
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020230133.11e-162transcription factor-like protein DPB
RefseqXP_020230134.11e-162transcription factor-like protein DPB
SwissprotQ9FNY21e-136DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A151SD621e-161A0A151SD62_CAJCA; Transcription factor Dp-1
STRINGLus100226200.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-126Transcription factor DP