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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10022426 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 303aa MW: 33892.9 Da PI: 8.4887 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.2 | 2.8e-20 | 113 | 162 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa a+++a+++++g Lus10022426 113 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAALAYDQAALRFKG 162 7********.**********94....45***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.8E-33 | 112 | 171 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-14 | 113 | 162 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.001 | 113 | 170 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-38 | 113 | 176 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-22 | 113 | 171 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.60E-24 | 113 | 171 | No hit | No description |
PRINTS | PR00367 | 1.6E-11 | 114 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-11 | 136 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MDRRRNKHKS TGGKRSNMNE SEEDGNNINR MDPDGFPVYS ARSQRDLDLM VSALSQVIGT 60 NSSSSSPSSH IHGAVPHHHQ QQQQQQQQQQ LPSVPENANQ GGGGEVGSSE RRHYRGVRQR 120 PWGKWAAEIR DPKKAARVWL GTFDTAEAAA LAYDQAALRF KGSKAKLNFP ERVQLSTSSS 180 NIIIPPTHHH HHPSSQLEPN YMYPHQFVPS SGTHGEAHNN NYNYGFNLFS PQVPTMSSTS 240 SSGSSQHHHH HQQQQQQQQQ QQEELLRFSM QFGTCSNYTT SPSSSTYPPP PPPPDDTMDY 300 FH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-27 | 112 | 173 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10022426 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ461518 | 1e-45 | GQ461518.1 Linum usitatissimum clone LU0CT0E35 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437444.1 | 2e-51 | PREDICTED: ethylene-responsive transcription factor ERF114-like | ||||
Refseq | XP_021844726.1 | 8e-51 | ethylene-responsive transcription factor ERF114 | ||||
STRING | Lus10022426 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF985 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 5e-37 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10022426 |