PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022418
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 433aa    MW: 48880.9 Da    PI: 6.2444
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022418genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.85.3e-139474291374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+cA++v+sg+l++a+ +La++s+l++pdgd+mqR+ ayft+ALa r+ +s++++ +al++ + +    see+ + k+f++++P+lk+++l++
  Lus10022418  47 LIHLLLTCANHVASGSLSNAEIALAQISQLSAPDGDTMQRISAYFTQALADRIIKSWPGVHSALNAAKLA--IPSEEFLVKKYFYDLFPFLKVAFLLT 142
                  689*************************************************************999998..589999999***************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  NqaI++a+ege++vH+iD+ +s+ +QW+aLlq+L++R+ +gpp+lRiTg+++    +ke l ++ + L + Ae+l++pf+fn++++++le+l++e+Lr
  Lus10022418 143 NQAIMDAMEGEKMVHVIDLHASESAQWIALLQSLSTRQpDGPPHLRITGIHQ----QKEVLDRMSRELVEEAERLDIPFQFNPILSSSLENLDVEKLR 236
                  ***********************************9998*************....9***************************************** PP

         GRAS 196 vkpgEalaVnlvlqlhrll..............desvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                  vk+gEala++++lqlh +l              ++s+ +     d++L++++slsPkv+vv+eq+++hn+ +++er+leal+ y+alfd+le+++pr+
  Lus10022418 237 VKTGEALAISSALQLHPFLgsddnnessrklsnSNSHFQ-RlFMDSFLNFLWSLSPKVMVVTEQDSNHNGVTLMERLLEALHSYAALFDCLESNVPRT 333
                  ***********************9999988874333333.24789***************************************************** PP

         GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  s er kvEr+l+g++i+n+v+ceg+er+erhe+lekW +rle aGF++v ls++ + q k+ll++++ dgyr++ee+g++v+gW+drpL+svSaWr
  Lus10022418 334 SVERLKVERMLFGEQIKNIVSCEGSERKERHEKLEKWIQRLELAGFGNVGLSYYGMLQGKRLLQTYGCDGYRMKEENGCVVIGWQDRPLFSVSAWR 429
                  ***********************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.61521409IPR005202Transcription factor GRAS
PfamPF035141.8E-13647429IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MFQDDGSSSA TSSPLQFFSM MPISPNLNSP YPSWLRELKS EERGLYLIHL LLTCANHVAS  60
GSLSNAEIAL AQISQLSAPD GDTMQRISAY FTQALADRII KSWPGVHSAL NAAKLAIPSE  120
EFLVKKYFYD LFPFLKVAFL LTNQAIMDAM EGEKMVHVID LHASESAQWI ALLQSLSTRQ  180
PDGPPHLRIT GIHQQKEVLD RMSRELVEEA ERLDIPFQFN PILSSSLENL DVEKLRVKTG  240
EALAISSALQ LHPFLGSDDN NESSRKLSNS NSHFQRLFMD SFLNFLWSLS PKVMVVTEQD  300
SNHNGVTLME RLLEALHSYA ALFDCLESNV PRTSVERLKV ERMLFGEQIK NIVSCEGSER  360
KERHEKLEKW IQRLELAGFG NVGLSYYGML QGKRLLQTYG CDGYRMKEEN GCVVIGWQDR  420
PLFSVSAWRC RK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-67294311381Protein SCARECROW
5b3h_A5e-67354316380Protein SCARECROW
5b3h_D5e-67354316380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022418
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314093.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A3N7FIU40.0A0A3N7FIU4_POPTR; Uncharacterized protein
TrEMBLB9HP160.0B9HP16_POPTR; Uncharacterized protein
STRINGLus100224180.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]