PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022032
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 491aa    MW: 54573.4 Da    PI: 5.1677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022032genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.3e-113213611055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + RR+++N++f  Lr+l+P       +K++Ka+iL  A+eY+k+L+
  Lus10022032 321 QDRREKLNERFIVLRSLVPFV-----TKMDKASILGDAIEYLKQLR 361
                  67******************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.472311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-12313365No hitNo description
SMARTSM003531.3E-11318366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-15320378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-16321376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8321360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MSNTTTPPPL PPHHQRQQLQ DMVQAAGPPG GGSVAAVQSV QWTYCIFWQF CPHRGFFTDH  60
NYQHPPAPKP ALSGHSTSDP SASSAFHSPP LFPPVFTPIH LHYQDDPEDD LEIDNNINDT  120
ENNDHDDAGS ENPDPETEHH DAMPVAAESV SQPPTELMQL DMSEDIRLGS PDECSNQLGS  180
STFNLIGSDD PIPPDRPQRW RFTMEEEEEG DDCFELDRED THYSHTVSAV LQNNRLGWST  240
SGPTSSAHHT AFTTWTRDGD GDFVVPNRKT SSSQWALKHI LFNVPYLHNK YREENGNNSP  300
KSSCGGAGGG GSRLRKGNSS QDRREKLNER FIVLRSLVPF VTKMDKASIL GDAIEYLKQL  360
RKKIQDLEAR NHQFEADPQR SGSGYENKKM RTAAEAERGR TPTKPTETSV EVSIIEKDAL  420
LELECEHREG LLLDMMLKLR EMRIEVTAVQ SSLSDGVLVA ELRAKVKENV GGKKVSIVEV  480
KRAINGIIQS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10022032
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279540.11e-115basic helix-loop-helix protein A
TrEMBLA0A061DRT41e-111A0A061DRT4_THECC; BHLH-like DNA binding protein
STRINGLus100220320.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-51bHLH family protein