PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021846
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 366aa    MW: 37510.7 Da    PI: 5.5099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021846genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.3e-12184229555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Lus10021846 184 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 229
                  99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-17177239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.00E-13177233No hitNo description
PROSITE profilePS5088817.282179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-16181238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9184229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MQPCSREMAA GLNSLLNDLH HFDPSSAASA DDFLDQLMLS AIPPSNAGAS WVTGADLVKS  60
PWADLASDDD TLNHNVSGFF EDSATVNLAS KLRHHQINGD GNSVHALFNG FSAGSIHPTT  120
VALSEPHFNL PPSQGGMQSG GQSFVAGAQT GAGGGVKQGQ TQGSGSTAGE ARVRARRGQA  180
TDPHSIAERL RRERIAERMK SLQELVPNAN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL  240
GGAAAVAPLV ADISSEGGGG GGGDCIQTTS TAAGANGGGA SNDNSLTMTE HQVAKLMEED  300
MGSAMQYLQG KGLCLMPISL ATAISTATCS NHRQPSSPNV SVLTMQSATV GNGAAGGDVK  360
DVSAP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170178ARVRARRGQ
2188193RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021846
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8851016e-54HQ885101.1 Linum usitatissimum clone Contig951 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018013.11e-119PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG94e-89BH066_ARATH; Transcription factor bHLH66
TrEMBLB9IMF51e-117B9IMF5_POPTR; Uncharacterized protein
STRINGLus100218460.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-63LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]