![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10021707 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 351aa MW: 38283.6 Da PI: 9.2883 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.3 | 2.9e-11 | 61 | 109 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW ++I++ + r++lg+f ++ Aa+a++ a ++++g Lus10021707 61 SKYKGVVPQP-NGRWGSQIYEK-----HHRVWLGTFNDEDSAARAYDVAVLRFRG 109 89****9888.8*********3.....5**********99************998 PP | |||||||
2 | B3 | 100.4 | 1e-31 | 184 | 283 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+ tpsdv+k++rlv+pk+ ae+h g + +++ l ++d g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v F+++g +e++l Lus10021707 184 FEKTVTPSDVGKLNRLVIPKQQAEKHfpiqgrG-GSGGGVLLNFKDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLRAGDIVRFQRSG-EEQQL 279 99***************************9953.457999*************************************************887.55556 PP EEEE CS B3 93 vvkv 96 ++ + Lus10021707 280 YIDF 283 7665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.5E-6 | 61 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-16 | 61 | 117 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.08E-23 | 61 | 116 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.1E-20 | 62 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-27 | 62 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.112 | 62 | 117 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-38 | 178 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.62E-31 | 183 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.51E-29 | 183 | 281 | No hit | No description |
SMART | SM01019 | 1.1E-26 | 184 | 287 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.776 | 184 | 287 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-28 | 184 | 283 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 351 aa Download sequence Send to blast |
MECISSSSTT DDSTTTATTT GVEKSHTPRE SLCRVGSGAS SVVLDPESEI EAAESRKLPS 60 SKYKGVVPQP NGRWGSQIYE KHHRVWLGTF NDEDSAARAY DVAVLRFRGR DAVTNFNPPP 120 TASSSDEAAF LSAHSKAEIV DMLRKHTYDD ELEQSRRQGK KQSHNQNNAV GSSGSGGSAR 180 DDLFEKTVTP SDVGKLNRLV IPKQQAEKHF PIQGRGGSGG GVLLNFKDGG GKVWRFRYSY 240 WNSSQSYVLT KGWSRFVKEK GLRAGDIVRF QRSGEEQQLY IDFSKSTSSN VVAELDRGSV 300 QPVQMVRLFG VNIFELAGSG GGGCNGKRLM ETTAAAFECS KKQRIIIDVL * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-49 | 183 | 293 | 13 | 124 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10021707 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002524409.1 | 1e-151 | AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
Swissprot | Q9ZWM9 | 1e-126 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | B9SEJ0 | 1e-150 | B9SEJ0_RICCO; DNA-binding protein RAV1, putative | ||||
STRING | Lus10021707 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-123 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10021707 |
Publications ? help Back to Top | |||
---|---|---|---|
|