PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021678
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 338aa    MW: 37395.1 Da    PI: 4.4817
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021678genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.77.7e-15110156454
          AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                   GVr++k +g+W+AeIr p++   + r +lg+f t eeAa+a++a ++++ 
  Lus10021678 110 VGVRQRK-WGKWAAEIRNPRT---KSRQWLGTFSTLEEAAQAYEAKKREYD 156
                  6*****9.**********954...49********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.609108169IPR001471AP2/ERF domain
PRINTSPR003671.4E-6109120IPR001471AP2/ERF domain
CDDcd000186.43E-21110164No hitNo description
SMARTSM003807.6E-15110172IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-14110155IPR016177DNA-binding domain
PfamPF008473.7E-10110157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-19111156IPR001471AP2/ERF domain
PRINTSPR003671.4E-6131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MKRISPSEDS LMGSKVRKVR VIYQDPYATD TESSDDESKH SIQALKKKPR RFVRELSLPA  60
VSGAVSPSNT GEQQESSSQD SNNSVKNHVR RRRACAATNS VSKTGPKMPV GVRQRKWGKW  120
AAEIRNPRTK SRQWLGTFST LEEAAQAYEA KKREYDAALA MEGSQKNESS STTSKNQLFS  180
ASTTDNDSES VLSHTSPASV LELDTSVVSN LNNEDLSKKD DGFGLLEEEG LQATGIVADL  240
EIPDFSFIDE AFVSSSCPPV NEDLDLGLDF TNVIDEFGRM YDDYCGIHTD QLDLLGFEGD  300
MIPTELPDFD FDFSSEEFAY LDNHHQQPQQ PLNIACP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021678
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002531632.11e-101ethylene-responsive transcription factor ERF119
TrEMBLA0A1L6CAY11e-102A0A1L6CAY1_9ROSI; AP2/ERF domain-containing transcription factor
STRINGLus100216780.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.24e-37ERF family protein