PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10021539 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 615aa MW: 69427.3 Da PI: 6.3165 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 7e-18 | 67 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd l ++v+++G g+W+++ r g++R++k+c++rw ++l Lus10021539 67 KGPWTAEEDTVLMEYVRKHGEGNWNAVQRNSGLNRCGKSCRLRWANHL 114 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 120 | 163 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E+ l++++++++G++ W++ a++++ gRt++++k++w++ Lus10021539 120 KGSFTPQEERLIIELHAKMGNK-WARMANMLP-GRTDNEIKNYWNT 163 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.616 | 62 | 114 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-31 | 64 | 161 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-15 | 66 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-16 | 67 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-24 | 68 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.13E-11 | 69 | 114 | No hit | No description |
PROSITE profile | PS51294 | 24.532 | 115 | 169 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-16 | 119 | 167 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-15 | 120 | 163 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-11 | 122 | 163 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-25 | 122 | 167 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 615 aa Download sequence Send to blast |
MISTTNKGEG GLSGFCTSVG GGGEFNAFIN NNNNNDNNNV VENPQELIQK GGKLGINNNG 60 GNCGLKKGPW TAEEDTVLME YVRKHGEGNW NAVQRNSGLN RCGKSCRLRW ANHLRPNLKK 120 GSFTPQEERL IIELHAKMGN KWARMANMLP GRTDNEIKNY WNTRIKRHQR QGLPLYPPDI 180 QPRQCFQTPP DSYHQFPPVT NSFAFQSEAE EQVPHQDASS SINVLPLFEY PQHHQQHQHN 240 HYSDSTPSTP FTFQTQKIDP FSTHVSPIPS PCSISNNNSN NNNNMSHHHI PTLAFLDFSF 300 PRPTPIQQSA NRFKRFASCG DIANSVVETD NNHVPHSHHF PSVSTAPPLP PHHPIHSPNN 360 NNNNITHFRN SHHQPQRLYD NNNNNLLLSS IVSSDQFHQE IQKENEEMCS LLATMSRQLP 420 SNHNYGDVTM LHTGQFNTTQ FDKDSEHDEN NINNMMRMRN KDKAHNILYA TTIANGGSMY 480 GGLLEDLWQE ANANLVVHNN NNLLFMQQGH HDQVNDEDND SFLPPIDQNN NITKTDISDD 540 DELSKLIEDN ETNHLKFCGE GGDQIGSNDP SSVVTTEDRV NFDLHHMFSF LPTTTDLDKP 600 PLKSCSWDNL PEIC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 65 | 167 | 5 | 106 | B-MYB |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10021539 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10021539 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 4e-64 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Lus10021539 |