PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021467
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 658aa    MW: 72430.6 Da    PI: 7.2049
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021467genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37e-24108209199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF   +++ +e
  Lus10021467 108 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVVAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNRKKLVAGDSIVFL--RSEFGE 201
                  89****************************996555555..8************************************************..459999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Lus10021467 202 LCVGIRRA 209
                  *****997 PP
2Auxin_resp98.78.2e-33279362183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa++a+++ +F+v+Y+Pr +++eF vk++ v++++++++s GmRfk+ fetedss++++  Gtv++ + +dp+rWpnS+Wr+L+
  Lus10021467 279 AARSAAEGRPFTVLYYPRGGSPEFYVKASLVKESMRIHWSCGMRFKIPFETEDSSRISWfNGTVASAQVSDPIRWPNSPWRLLQ 362
                  688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-37101211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-29101210IPR015300DNA-binding pseudobarrel domain
CDDcd100175.62E-22107208No hitNo description
PfamPF023628.4E-22108209IPR003340B3 DNA binding domain
PROSITE profilePS5086312.915108210IPR003340B3 DNA binding domain
SMARTSM010191.3E-22108210IPR003340B3 DNA binding domain
PfamPF065076.6E-28279362IPR010525Auxin response factor
PROSITE profilePS5174511.804545627IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MKEKSFVDPQ LWQACAGSLV QIPPINSHVF YFPQGHAEHS QSPVSFPPDC SELPAAVLCR  60
VAAVDFLADQ DSDEVFSKLT FVPISSQSEE KVFDGRSLME KENKSASFAK TLTQSDANNG  120
GGFSVPRYCA ETIFPRLDYS ADPPVQTVVA KDVHGEVWKF RHIYRGTPRR HLLTTGWSSF  180
VNRKKLVAGD SIVFLRSEFG ELCVGIRRAK RGVAGGVGAE KLCQSGWGIN SNSWSAGGIF  240
SPYGGVSIKR NGSGDSGVGG RREGPAAPVK VTAEEVLEAA RSAAEGRPFT VLYYPRGGSP  300
EFYVKASLVK ESMRIHWSCG MRFKIPFETE DSSRISWFNG TVASAQVSDP IRWPNSPWRL  360
LQVTWDEPDL LQNVRRVSPW LVELVSSIPM IQPPPLPFSP PSKKSRFDFA LEEGRFQLPC  420
YTSNNSTLAY SSGSCYYNTA AGIQGARHFL QIGASLSDLR FNQYPNFEQQ FVVNPQCSSN  480
ESVSCLLTIG GSSSSTSEKK KEKKEFLLFG QVILTEQQVE VNRSSESVSQ GSSSESDDES  540
NRTAGYCCKV FIESEDAGRT IDLTAFASYE DLYTRLVDMF GMDRALMLNR VLYRTAAGAV  600
KRIGDEPFSV FSRTASRLTI LMNPDHNVGR TWMGVMDHNV EIGLEGSNKR GALSIFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-76438748392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021467
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529941.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLB9SVC20.0B9SVC2_RICCO; Auxin response factor
STRINGLus100214670.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]