PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10021266 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | Dof | ||||||||
Protein Properties | Length: 305aa MW: 32716.7 Da PI: 6.3067 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 92 | 4.8e-29 | 37 | 85 | 5 | 53 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg 53 + +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG lr +Gg Lus10021266 37 TPSCPRCGSSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGCLRHRSIGG 85 568*****************************************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-16 | 36 | 80 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.9E-25 | 38 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 24.12 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 40 | 76 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MEIGAAADGG GMFWREPPPP LTTSSNNNIG GAVERTTPSC PRCGSSNTKF CYYNNYSLSQ 60 PRYFCKGCRR YWTKGGCLRH RSIGGLSGGG SPPPTHHNNN NNKSSSSSSS FKISSSRRLS 120 HDKTTTATYT AAPPDQHHQH GSHIDLATVY AKFLNSTNGA NDDTLLPSTN NPMEGASSSS 180 AATSSSAAAA APSATSLFSS SMMAVDLPLL HLPPGSGGGD DQLMMYYCGG GGLNNNYELP 240 LLPGEEDIFQ LHPPRHQVVG TQNYHDQQQQ RDPIPDDDDD DSNDHDLMMF GNYWSSFELS 300 NVTR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10021266 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10021266 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1817 | 33 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 4e-25 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10021266 |