PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021031
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bZIP
Protein Properties Length: 738aa    MW: 80484.4 Da    PI: 6.508
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021031genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.35e-11169207745
                  HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                   rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Lus10021031 169 LRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 207
                  69************************8766666665544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0028163228IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.737165214IPR004827Basic-leucine zipper domain
CDDcd147086.54E-22167213No hitNo description
PfamPF001703.7E-8169207IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-7169211No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-7170213No hitNo description
PROSITE patternPS000360170185IPR004827Basic-leucine zipper domain
PROSITE profilePS5132932.212471607IPR017901C-CAP/cofactor C-like domain
Gene3DG3DSA:2.160.20.701.3E-9484572IPR016098Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal
PfamPF079863.5E-31502616IPR012945Tubulin binding cofactor C-like domain
SMARTSM006730.069509546IPR006599CARP motif
SMARTSM006730.0011547581IPR006599CARP motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MYLDGQQQQQ QNDPTVHILP HHNQQGGMMS SSTSTSTRPP PTLNIFPSHP MYTKINNGTS  60
TGSPPPHHHH HHGVGVSSVG AATSTAGPKR PSSSSSPSPS TYPTVAPPST SQPAAKSIKR  120
EGMNRKGANN GGASNTEHQG PKTPDPKVFL VVLSRSMILL GFRAHPQTLR RLAQNREAAR  180
KSRLRKKAYV QQLESSRIKL SQLEQELNRA RSQIIANQIE PLTEQQIMGI CGMQQSTQEA  240
EEALSQGVEA LNQSLSETIA ADSLSCQPNM ANYMGQMAMA INKLSTFEAF VRQKLLPRTH  300
KDSAAVADVW PSTSAFDGYL SALSPLQLVR SNSRRFMPSH ADEEAHQLSY LQKHMGNILS  360
LLAEPVEGDG EGESEESLVL TMEGFEHLGF LIQIGEQGSE RVSLSQATPF FANSDPDMPA  420
VPVPASEVLD WITENISSAL ETITERISAK ENGPSSASDQ DIAMADTCND TVKTSPSSRG  480
TSFIEGVSKS SCVKQTSDLK GSSLKVLNCH ESSIYILAPL RYATVYGCSD STIVLGAVGK  540
AVRIEHCERV HVITAARRVC IANCRECVFF LGVNQRPLMV GDNHKLHVAP YNTFYSDLEA  600
HMAEAGVEAS INKWDEPLAL GVVDPHDSLS HPAGVSDVQA ETATRIDPDH FTNFLIPNWF  660
GGESSGMTKD NPFSLPDSYM ESHVKNLKNL DEIKQLLRET PLEESRKREL SCALHTLFKD  720
WLYASGNIRQ LYCLQGD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021031
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1744450.0JX174445.1 Linum usitatissimum clone LuBAC364K11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532335.10.0TBCC domain-containing protein 1
TrEMBLB9T2660.0B9T266_RICCO; Uncharacterized protein
STRINGLus100210310.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.12e-25bZIP family protein