PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

NAC

Protein Properties

Length: 399aa MW: 43457.8 Da PI: 4.8736

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10020896	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.3	1.9e-46	7	135	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 l pGfrFhPtd elv +yLk+kv gkkl++ ++i+e+diyk+ PwdLp k +++++ +wyfF++r+kkya g r +ra++ gyWk+tgkd++vl + Lus10020896 7 LSPGFRFHPTDVELVRFYLKRKVMGKKLPF-HCITELDIYKHAPWDLPlKsVLRTGDLKWYFFCPREKKYAIGPRMKRAAEGGYWKSTGKDRPVLY-D 102 579************************9.89***********6445666888**********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 +e+ g+ +tLvf+ g+ pkge+tdWvm eyrle Lus10020896 103 NEVAGMIRTLVFHLGKPPKGERTDWVMYEYRLE 135 99***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-53	3	157	IPR003441	NAC domain
PROSITE profile	PS51005	50.51	7	157	IPR003441	NAC domain
Pfam	PF02365	1.7E-24	9	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MVGSARLSPG FRFHPTDVEL VRFYLKRKVM GKKLPFHCIT ELDIYKHAPW DLPLKSVLRT 60 GDLKWYFFCP REKKYAIGPR MKRAAEGGYW KSTGKDRPVL YDNEVAGMIR TLVFHLGKPP 120 KGERTDWVMY EYRLEDKKLI DSGVSQDSYV LSVLFKKDGP GPKNGAQYGA PFKEEEWESD 180 DEEDEVNDGI GAALWAGAST PSTVLSIERT NSAVTSPVVP DGSCVVSQVS CPAEKENAYV 240 VGPVGLDNTN ASEGVAQALH GGLEDVFSAA PLAFQLNPQG EYCASGGTFQ AQHSPQTVHV 300 ASEEHGEAVH TGFEPVAEND DVLAMLDYFT EEAPFTLDQL NNTEQKGTVI ENVNKAEAQG 360 GGEPGEAGAV GGRVGVQFKE GKAEMAGFPS YKLNWLGK*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MVGSARLSPG FRFHPTDVEL VRFYLKRKVM GKKLPFHCIT ELDIYKHAPW DLPLKSVLRT  60
GDLKWYFFCP REKKYAIGPR MKRAAEGGYW KSTGKDRPVL YDNEVAGMIR TLVFHLGKPP  120
KGERTDWVMY EYRLEDKKLI DSGVSQDSYV LSVLFKKDGP GPKNGAQYGA PFKEEEWESD  180
DEEDEVNDGI GAALWAGAST PSTVLSIERT NSAVTSPVVP DGSCVVSQVS CPAEKENAYV  240
VGPVGLDNTN ASEGVAQALH GGLEDVFSAA PLAFQLNPQG EYCASGGTFQ AQHSPQTVHV  300
ASEEHGEAVH TGFEPVAEND DVLAMLDYFT EEAPFTLDQL NNTEQKGTVI ENVNKAEAQG  360
GGEPGEAGAV GGRVGVQFKE GKAEMAGFPS YKLNWLGK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-41	7	157	15	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250\|UniProtKB:Q9C8W9}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10020896

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021632958.1	1e-103	NAC domain-containing protein 82-like
Swissprot	Q9FY82	2e-87	NAC82_ARATH; NAC domain-containing protein 82
TrEMBL	A0A0M3R851	1e-101	A0A0M3R851_MANES; NAC transcription factors 13
STRING	Lus10020896	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3302	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.4	1e-84	NAC domain containing protein 82

Link Out ? help Back to Top
Phytozome	Lus10020896

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Ohbayashi I, et al. Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. Plant Cell, 2017. 29(10): p. 2644-2660 [PMID:28899981]