PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020873
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 481aa    MW: 54803.5 Da    PI: 9.4311
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020873genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.11.2e-2826110187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+ qe  aL+++r+em+ +++++ l++plWee+s++m+e gf+rs+k+Ckek+en++k++k++keg+++r++++s  +++f+qlea
  Lus10020873  26 RWPSQEAVALLRIRSEMDASFKDSGLRGPLWEEISRRMSELGFSRSAKKCKEKFENIQKYHKRTKEGRSRRQNGKS--YKFFQQLEA 110
                  8*********************************************************************977776..*******85 PP
2trihelix96.81.9e-30306393187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                  rW+k+e+ aLi++r++ e r++    k+plW evs+ mr+ g++r+pk+Ckekwen+nk++k++ke+++++ ++ +s+tcpyf+ql+a
  Lus10020873 306 RWPKEEIEALIKVRTSFEVRYQGHGPKGPLWIEVSADMRRLGYNRNPKRCKEKWENMNKYFKRVKESRSSKaRPVDSKTCPYFHQLDA 393
                  8*******************************************************************9996799***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0052385IPR001005SANT/Myb domain
PfamPF138371.8E-1924111No hitNo description
PROSITE profilePS500907.0972483IPR017877Myb-like domain
CDDcd122032.66E-222590No hitNo description
SMARTSM007170.0054303365IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-4303363IPR009057Homeodomain-like
PROSITE profilePS500907.236304363IPR017877Myb-like domain
PfamPF138373.1E-21305394No hitNo description
CDDcd122033.83E-22306370No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MEVSTAPQTG GGGAAAAEEY SGGRNRWPSQ EAVALLRIRS EMDASFKDSG LRGPLWEEIS  60
RRMSELGFSR SAKKCKEKFE NIQKYHKRTK EGRSRRQNGK SYKFFQQLEA IDRNSHNSRL  120
AKVLAADSVN QTSGGGGGAI DATPCSVYSP VRIHFLDSTS TSTTSITPSK EEEEEEEEES  180
EGTKKKKKLT EFFDSLMARV IEKQESLQRN FAEAVERFER DRMARDEAWK LKELERIKRE  240
RELLIRERET VAAKDAAVLS FLQKFTNQPG SFPLPLPLPI PERQTEKLPI RKIQTNAAQG  300
LVPQARWPKE EIEALIKVRT SFEVRYQGHG PKGPLWIEVS ADMRRLGYNR NPKRCKEKWE  360
NMNKYFKRVK ESRSSKARPV DSKTCPYFHQ LDALYSGKRT KPDSSANSGG SELKPEELLM  420
HMIRRQEELQ HPESATTDDG GEKLNAEEKE ESDGYRNNPT ATMEQSPERD DRRGSYLCQS  480
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Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020873
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4614840.0GQ461484.1 Linum usitatissimum clone LU0CT0D348 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075316.11e-163trihelix transcription factor GT-2
SwissprotQ391171e-102TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A067KGU31e-161A0A067KGU3_JATCU; Uncharacterized protein
STRINGLus100208730.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-55Trihelix family protein