 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Lus10020873 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
| Family |
Trihelix |
| Protein Properties |
Length: 481aa MW: 54803.5 Da PI: 9.4311 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lus10020873 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 91.1 | 1.2e-28 | 26 | 110 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+ qe aL+++r+em+ +++++ l++plWee+s++m+e gf+rs+k+Ckek+en++k++k++keg+++r++++s +++f+qlea
Lus10020873 26 RWPSQEAVALLRIRSEMDASFKDSGLRGPLWEEISRRMSELGFSRSAKKCKEKFENIQKYHKRTKEGRSRRQNGKS--YKFFQQLEA 110
8*********************************************************************977776..*******85 PP
|
| 2 | trihelix | 96.8 | 1.9e-30 | 306 | 393 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87
rW+k+e+ aLi++r++ e r++ k+plW evs+ mr+ g++r+pk+Ckekwen+nk++k++ke+++++ ++ +s+tcpyf+ql+a
Lus10020873 306 RWPKEEIEALIKVRTSFEVRYQGHGPKGPLWIEVSADMRRLGYNRNPKRCKEKWENMNKYFKRVKESRSSKaRPVDSKTCPYFHQLDA 393
8*******************************************************************9996799***********85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 481 aa
Download sequence Send
to blast |
MEVSTAPQTG GGGAAAAEEY SGGRNRWPSQ EAVALLRIRS EMDASFKDSG LRGPLWEEIS 60
RRMSELGFSR SAKKCKEKFE NIQKYHKRTK EGRSRRQNGK SYKFFQQLEA IDRNSHNSRL 120
AKVLAADSVN QTSGGGGGAI DATPCSVYSP VRIHFLDSTS TSTTSITPSK EEEEEEEEES 180
EGTKKKKKLT EFFDSLMARV IEKQESLQRN FAEAVERFER DRMARDEAWK LKELERIKRE 240
RELLIRERET VAAKDAAVLS FLQKFTNQPG SFPLPLPLPI PERQTEKLPI RKIQTNAAQG 300
LVPQARWPKE EIEALIKVRT SFEVRYQGHG PKGPLWIEVS ADMRRLGYNR NPKRCKEKWE 360
NMNKYFKRVK ESRSSKARPV DSKTCPYFHQ LDALYSGKRT KPDSSANSGG SELKPEELLM 420
HMIRRQEELQ HPESATTDDG GEKLNAEEKE ESDGYRNNPT ATMEQSPERD DRRGSYLCQS 480
*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | GQ461484 | 0.0 | GQ461484.1 Linum usitatissimum clone LU0CT0D348 microsatellite sequence. |
