PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10020857

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 479aa MW: 53153.7 Da PI: 4.5325

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10020857	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	233.4	9.9e-72	92	467	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlsel.......aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 +lLl Aea+++++ l ++++a+l + +s + ++++Rla +ft++L ++ + + + +++++ +ss + a+++++e+sP++kf Lus10020857 92 SLLLMGAEAIDAENWLLCSSVIAELMIHnqsnilsSSTSSSSLERLAGFFTQGLINKNKI---SFDDGIDRNDQHSADSSVSSPAFHILQELSPYIKF 186 67888999999999988888877774322223454455559***********887666...556666777777778999999********** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvak 184 +h++aNqaIlea +++ +H++Dfdi++GlQWp+L+ La+ + ++p+s+R+T++ p+++ sk ++++tg+rL+++A++++++fef+++ Lus10020857 187 GHFAANQAILEASFENRNIHVVDFDINEGLQWPPLMADLAAVAgsypnlDSPASFRLTALILPNASaSKSTVHQTGRRLKEYADSINLSFEFDAI--- 281 ************************************9885555555589***9999888***********************7... PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.....sFlerflealeyysalfdsleaklpr 277 + +l+++rv+pg al+ n++++ + ++++ +l + ++L +lsP++vv+ve+e+ +s+ +F + f+ea+e+ysa+ dsl+a Lus10020857 282 --HLTDLDTIRVDPGQALISNCMIHQLHSPNRNFTLVN---TFLASSVRLSPRLVVLVEEELFNSSKtipsmPFSDFFCEAIEHYSAISDSLAADGRI 374 ..66677999**********99999999999999...****************54433335555****************999555 PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerlee..aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + + + ++E+ +lgr++v+ + + + e + W++ +++ + Fk+vp+s+++++qa++l++ ++ gy v++e+ l l+Wk+rpL ++S W Lus10020857 375 HGKGMEMMEKDVLGRRVVDSLVQFPCG---ESE-KFGWENGFDSlkSEFKAVPFSTTNVSQANYLVSLFS-GGYWVQHERCRLGLCWKSRPLATASIW 467 66999*********999888877...344.446*976689******************.89*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.072	64	449	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-69	92	467	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MMEIEEVAAH FPFNLSSYEQ QCSSSMEEAI SSLENTTEEP FHLNNSDCWE IRLMEIESDL 60 FMDLITSSVS PLNTPLMEEE HEENNTNSRL PSLLLMGAEA IDAENWLLCS SVIAELMIHN 120 QSNILSSSTS SSSLERLAGF FTQGLINKNK ISFDDGIDRN DQHSADSSVS SPAFHILQEL 180 SPYIKFGHFA ANQAILEASF ENRNIHVVDF DINEGLQWPP LMADLAAVAG SYPNLDSPAS 240 FRLTALILPN ASASKSTVHQ TGRRLKEYAD SINLSFEFDA IHLTDLDTIR VDPGQALISN 300 CMIHQLHSPN RNFTLVNTFL ASSVRLSPRL VVLVEEELFN SSKTIPSMPF SDFFCEAIEH 360 YSAISDSLAA DGRIHGKGME MMEKDVLGRR VVDSLVQFPC GESEKFGWEN GFDSLKSEFK 420 AVPFSTTNVS QANYLVSLFS GGYWVQHERC RLGLCWKSRP LATASIWVPK GLKGRGNA*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MMEIEEVAAH FPFNLSSYEQ QCSSSMEEAI SSLENTTEEP FHLNNSDCWE IRLMEIESDL  60
FMDLITSSVS PLNTPLMEEE HEENNTNSRL PSLLLMGAEA IDAENWLLCS SVIAELMIHN  120
QSNILSSSTS SSSLERLAGF FTQGLINKNK ISFDDGIDRN DQHSADSSVS SPAFHILQEL  180
SPYIKFGHFA ANQAILEASF ENRNIHVVDF DINEGLQWPP LMADLAAVAG SYPNLDSPAS  240
FRLTALILPN ASASKSTVHQ TGRRLKEYAD SINLSFEFDA IHLTDLDTIR VDPGQALISN  300
CMIHQLHSPN RNFTLVNTFL ASSVRLSPRL VVLVEEELFN SSKTIPSMPF SDFFCEAIEH  360
YSAISDSLAA DGRIHGKGME MMEKDVLGRR VVDSLVQFPC GESEKFGWEN GFDSLKSEFK  420
AVPFSTTNVS QANYLVSLFS GGYWVQHERC RLGLCWKSRP LATASIWVPK GLKGRGNA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-34	173	470	98	381	Protein SCARECROW
5b3h_A	3e-34	173	470	97	380	Protein SCARECROW
5b3h_D	3e-34	173	470	97	380	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10020857

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011012014.1	1e-128	PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBL	U5FEG1	1e-126	U5FEG1_POPTR; Uncharacterized protein
STRING	Lus10020857	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13148	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	1e-40	GRAS family protein

Link Out ? help Back to Top
Phytozome	Lus10020857