PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10020789

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

M-type_MADS

Protein Properties

Length: 359aa MW: 41003.8 Da PI: 4.93

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10020789	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.1	1.5e-15	3	43	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+n++nr+ t+ kR++ +lKK eE S+LC++e+++++f + Lus10020789 3 LIKNERNRSNTYKKRKANLLKKMEEFSILCGVEACLVVFQP 43 59************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.4E-7	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.31E-17	1	89	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.28E-17	1	85	No hit	No description
PROSITE profile	PS50066	14.339	1	41	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-16	4	43	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MELIKNERNR SNTYKKRKAN LLKKMEEFSI LCGVEACLVV FQPPNLTEDG GDQLQTWPSD 60 RYSVDATIQR YRTSDGPKRC YHLSDYFAEK KKRVGVELSK INKLIYSRKF PTWDARIDRF 120 SADQLKALLG KLDSKIETAD QKLECFNLIP EHDQFLVPVR NFEQFGLASD YYGNDFQQVY 180 CNDQSFQFGN HDQGSFMAML NPNYFGSLYW DQDNNFGYYD DPPVNNLDNI GTELILSPEK 240 MRTIDFEPFG HHHLANQSEG QMVAAKVENA TRRFGVYGGE QSMVTSSYGS SMEFGEYGMM 300 SYSDGSYMNS GQTIQAPVEM QFQMSGGSYL QRQFSQELDG GGHQAFSGFE KLLICQSE*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MELIKNERNR SNTYKKRKAN LLKKMEEFSI LCGVEACLVV FQPPNLTEDG GDQLQTWPSD  60
RYSVDATIQR YRTSDGPKRC YHLSDYFAEK KKRVGVELSK INKLIYSRKF PTWDARIDRF  120
SADQLKALLG KLDSKIETAD QKLECFNLIP EHDQFLVPVR NFEQFGLASD YYGNDFQQVY  180
CNDQSFQFGN HDQGSFMAML NPNYFGSLYW DQDNNFGYYD DPPVNNLDNI GTELILSPEK  240
MRTIDFEPFG HHHLANQSEG QMVAAKVENA TRRFGVYGGE QSMVTSSYGS SMEFGEYGMM  300
SYSDGSYMNS GQTIQAPVEM QFQMSGGSYL QRQFSQELDG GGHQAFSGFE KLLICQSE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10020789

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10020789	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	6e-22	AGAMOUS-like 82

Link Out ? help Back to Top
Phytozome	Lus10020789