PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10020771
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 610aa    MW: 67068.5 Da    PI: 7.0272
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10020771genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-10555604147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + +W+ eE+  l+++v+q+G+g Wk I         +R++ ++k++w++ 
      Lus10020771 555 KRKWSIEEETALINGVQQFGPGAWKDILDSRRdqfDNRSEVDLKDKWRNM 604
                      569*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.236550609IPR017930Myb domain
SuperFamilySSF466895.38E-15552606IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-12552606IPR009057Homeodomain-like
SMARTSM007172.1E-7554607IPR001005SANT/Myb domain
PfamPF002497.4E-9555604IPR001005SANT/Myb domain
CDDcd116601.97E-17556606No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MELKRTQPSE EMDGDIMQWT LEFLLRECTN GGLVTSLLSN IRLPFPAENS RVKKTIVLRS  60
IQDQLGKGSV SENILDWLEN LEEIDRRDEI SVLESMKLAY CAVAVECTLR RGLKEAVVRI  120
WKVRIQRLVG KSELVSGEVP RLQLEVEMAI KDLNALMVVQ KWSKKHNALK LVQDYLNEAF  180
GIMGPSFLQL AARQQMEMDS HHKIGIVNGD GSGDADLGRA ECEVTLNMNG TYDKPEEDSV  240
GVLDGTVSVE EHLGDVAGGR TKASHDVDDS RPHNKEKLNR KKRKDRNSDI PVCSSGKVAG  300
SMTGKEQVCD ESGSEPVELP DTGGRAEGED TTKKSEKKKK RKGASASDKR KHASRSHGPV  360
KIADVGEFDE IGDLNVESRD GKNVGASISV TSNQGVPVVQ GGKDVVSPPY QIPTSLPSSS  420
DKGKHVSHCH GQVKIADVGE TRDLFVESKD GEIVVASRPA TGNQGVPVAE GGKHVHSPQR  480
QIPASLASEA GNKKPALDKQ NEKDLDAEAT ENANDKGEGS ASSAGKRPQM ETHRRLPVYP  540
LKKYGDLNLL ERRKKRKWSI EEETALINGV QQFGPGAWKD ILDSRRDQFD NRSEVDLKDK  600
WRNMTKCNR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279284RKKRKD
2336341KKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10020771
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100207710.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.26e-14MYB_related family protein